Wall clock time and date at job start Mon Mar 30 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 C 1.53003 * 112.90944 * 305.78060 * 3 2 1 5 5 H 1.09003 * 109.46675 * 55.18752 * 4 3 2 6 6 O 1.42901 * 109.47319 * 175.18366 * 4 3 2 7 7 C 1.50698 * 109.47097 * 295.18627 * 4 3 2 8 8 H 1.07991 * 120.00352 * 354.76690 * 7 4 3 9 9 C 1.37883 * 119.99715 * 174.76592 * 7 4 3 10 10 N 1.31510 * 120.00253 * 359.97438 * 9 7 4 11 11 Si 1.86798 * 119.99759 * 180.02562 * 9 7 4 12 12 H 1.48496 * 109.47246 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47175 * 120.00133 * 11 9 7 14 14 H 1.48502 * 109.46962 * 239.99898 * 11 9 7 15 15 C 1.53777 * 113.61440 * 174.53493 * 3 2 1 16 16 C 1.53779 * 87.08345 * 220.01854 * 15 3 2 17 17 C 1.53776 * 113.61703 * 77.03284 * 3 2 1 18 18 H 1.08998 * 109.47231 * 185.50110 * 1 2 3 19 19 H 1.08998 * 109.47652 * 305.50773 * 1 2 3 20 20 H 1.09009 * 109.47038 * 65.50296 * 1 2 3 21 21 H 1.08993 * 109.47108 * 240.00166 * 2 1 3 22 22 H 1.08995 * 109.47161 * 119.99434 * 2 1 3 23 23 H 0.96694 * 113.99566 * 69.12601 * 6 4 3 24 24 H 0.96996 * 120.00125 * 180.02562 * 10 9 7 25 25 H 1.08994 * 113.62119 * 105.46945 * 15 3 2 26 26 H 1.09003 * 113.61377 * 334.56208 * 15 3 2 27 27 H 1.09002 * 113.62120 * 139.98023 * 16 15 3 28 28 H 1.09003 * 113.61426 * 270.88210 * 16 15 3 29 29 H 1.09002 * 113.61483 * 25.43569 * 17 3 2 30 30 H 1.08998 * 113.62100 * 254.53010 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4615 2.2787 -1.1433 5 1 0.3728 2.2404 -1.1067 6 8 1.8951 3.6337 -1.0092 7 6 1.9397 1.7264 -2.4614 8 1 2.6569 0.9193 -2.4804 9 6 1.4613 2.2515 -3.6432 10 7 0.5875 3.2340 -3.6201 11 14 2.0535 1.5664 -5.2770 12 1 3.0279 0.4731 -5.0313 13 1 0.8954 1.0357 -6.0401 14 1 2.7083 2.6462 -6.0583 15 6 3.5676 1.5558 0.1342 16 6 3.3182 2.7538 1.0656 17 6 1.9471 2.1287 1.3730 18 1 -0.3633 -1.0229 0.0985 19 1 -0.3634 0.5968 0.8365 20 1 -0.3633 0.4262 -0.9352 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5137 0.8900 23 1 2.8397 3.7622 -1.1714 24 1 0.2507 3.6032 -4.4514 25 1 4.0691 1.8230 -0.7959 26 1 4.0265 0.7026 0.6338 27 1 3.9868 2.7848 1.9259 28 1 3.2556 3.7080 0.5424 29 1 1.9631 1.4322 2.2113 30 1 1.1404 2.8584 1.4430 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686138123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:11 Heat of formation + Delta-G solvation = -46.679741 kcal Electronic energy + Delta-G solvation = -12045.139050 eV Core-core repulsion = 10033.584426 eV Total energy + Delta-G solvation = -2011.554624 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.18499 -34.18231 -32.44931 -31.67392 -27.25134 -24.91435 -24.55548 -22.41264 -20.48293 -17.68282 -16.87227 -14.97500 -14.72278 -14.52802 -13.53998 -13.49588 -12.67003 -12.14046 -11.98198 -11.52611 -11.42714 -11.24170 -10.92937 -10.72510 -10.48271 -10.40119 -10.13434 -9.98194 -9.41028 -9.11651 -8.64799 -8.46790 -7.91743 -5.99003 -4.14224 3.27693 3.36468 3.39795 4.40988 5.27656 5.45647 5.50311 5.54489 5.66800 5.99623 6.00523 6.23236 6.31819 6.34836 6.42944 6.51699 6.66838 6.73035 6.82938 6.89231 6.96338 7.09507 7.25234 7.39466 7.82220 7.93668 8.25617 8.92709 9.42964 9.61588 11.05894 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044006 B = 0.015376 C = 0.014048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.129565 B = 1820.633899 C = 1992.684884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.095 4.095 4 C 0.250 3.750 5 H 0.063 0.937 6 O -0.569 6.569 7 C -0.556 4.556 8 H 0.057 0.943 9 C 0.076 3.924 10 N -0.866 5.866 11 Si 0.885 3.115 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.132 4.132 18 H 0.037 0.963 19 H 0.044 0.956 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.039 0.961 23 H 0.346 0.654 24 H 0.259 0.741 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -3.529 5.962 7.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.095 4.095 4 C 0.192 3.808 5 H 0.081 0.919 6 O -0.374 6.374 7 C -0.594 4.594 8 H 0.076 0.924 9 C -0.129 4.129 10 N -0.502 5.502 11 Si 0.713 3.287 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.171 4.171 16 C -0.180 4.180 17 C -0.170 4.170 18 H 0.056 0.944 19 H 0.063 0.937 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.191 0.809 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.220 -3.321 6.000 7.208 hybrid contribution 0.865 -0.583 -1.095 1.512 sum 3.086 -3.904 4.905 6.987 Atomic orbital electron populations 1.21716 0.96566 0.99714 1.02406 1.21252 0.95577 0.96134 1.00110 1.22692 0.94932 0.95659 0.96253 1.19154 0.94911 0.77967 0.88729 0.91920 1.86525 1.27404 1.30792 1.92634 1.21663 1.26885 1.19712 0.91175 0.92443 1.25058 0.94358 0.94414 0.99078 1.70065 1.29153 1.24185 1.26843 0.86667 0.78736 0.79053 0.84255 1.19720 1.21002 1.21013 1.22902 0.97505 0.97297 0.99409 1.22991 0.96840 0.99337 0.98790 1.22880 0.97660 0.99299 0.97119 0.94356 0.93682 0.91359 0.91777 0.94212 0.80860 0.93092 0.91231 0.92132 0.93713 0.88786 0.92239 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.26 37.16 0.34 -2.34 16 2 C -0.09 -1.77 5.12 -26.73 -0.14 -1.90 16 3 C -0.09 -1.93 0.51 -153.70 -0.08 -2.01 16 4 C 0.25 6.19 2.08 -27.88 -0.06 6.13 16 5 H 0.06 1.74 6.56 -51.93 -0.34 1.40 16 6 O -0.57 -14.38 11.03 -35.23 -0.39 -14.77 16 7 C -0.56 -14.84 7.46 -34.44 -0.26 -15.10 16 8 H 0.06 1.52 7.28 -52.49 -0.38 1.14 16 9 C 0.08 2.10 5.43 -17.82 -0.10 2.00 16 10 N -0.87 -25.38 13.06 55.43 0.72 -24.65 16 11 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C -0.13 -2.49 6.67 -25.92 -0.17 -2.67 16 16 C -0.14 -2.50 7.46 -25.92 -0.19 -2.69 16 17 C -0.13 -2.44 6.72 -25.92 -0.17 -2.62 16 18 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 19 H 0.04 0.78 7.92 -51.93 -0.41 0.37 16 20 H 0.07 1.42 6.85 -51.92 -0.36 1.06 16 21 H 0.06 1.28 7.52 -51.93 -0.39 0.89 16 22 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 23 H 0.35 8.02 6.99 45.56 0.32 8.34 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 26 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.73 5.53 -51.93 -0.29 1.44 16 29 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 238.65 15.07 3.60 3.60 Total: -1.00 -28.64 238.65 -5.81 -34.45 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.89 Total: 6.50 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.82 Total: -21.20 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.72 Total: -24.65 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.39 Total: -14.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.64 -5.81 -34.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.233 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds