Wall clock time and date at job start Mon Mar 30 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 C 1.53003 * 112.90944 * 305.78060 * 3 2 1 5 5 H 1.09003 * 109.46675 * 55.18752 * 4 3 2 6 6 O 1.42901 * 109.47319 * 175.18366 * 4 3 2 7 7 C 1.50698 * 109.47097 * 295.18627 * 4 3 2 8 8 H 1.07991 * 120.00352 * 354.76690 * 7 4 3 9 9 C 1.37883 * 119.99715 * 174.76592 * 7 4 3 10 10 N 1.31510 * 120.00253 * 359.97438 * 9 7 4 11 11 Si 1.86798 * 119.99759 * 180.02562 * 9 7 4 12 12 H 1.48496 * 109.47246 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47175 * 120.00133 * 11 9 7 14 14 H 1.48502 * 109.46962 * 239.99898 * 11 9 7 15 15 C 1.53777 * 113.61440 * 174.53493 * 3 2 1 16 16 C 1.53779 * 87.08345 * 220.01854 * 15 3 2 17 17 C 1.53776 * 113.61703 * 77.03284 * 3 2 1 18 18 H 1.08998 * 109.47231 * 185.50110 * 1 2 3 19 19 H 1.08998 * 109.47652 * 305.50773 * 1 2 3 20 20 H 1.09009 * 109.47038 * 65.50296 * 1 2 3 21 21 H 1.08993 * 109.47108 * 240.00166 * 2 1 3 22 22 H 1.08995 * 109.47161 * 119.99434 * 2 1 3 23 23 H 0.96694 * 113.99566 * 69.12601 * 6 4 3 24 24 H 0.96996 * 120.00125 * 180.02562 * 10 9 7 25 25 H 1.08994 * 113.62119 * 105.46945 * 15 3 2 26 26 H 1.09003 * 113.61377 * 334.56208 * 15 3 2 27 27 H 1.09002 * 113.62120 * 139.98023 * 16 15 3 28 28 H 1.09003 * 113.61426 * 270.88210 * 16 15 3 29 29 H 1.09002 * 113.61483 * 25.43569 * 17 3 2 30 30 H 1.08998 * 113.62100 * 254.53010 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4615 2.2787 -1.1433 5 1 0.3728 2.2404 -1.1067 6 8 1.8951 3.6337 -1.0092 7 6 1.9397 1.7264 -2.4614 8 1 2.6569 0.9193 -2.4804 9 6 1.4613 2.2515 -3.6432 10 7 0.5875 3.2340 -3.6201 11 14 2.0535 1.5664 -5.2770 12 1 3.0279 0.4731 -5.0313 13 1 0.8954 1.0357 -6.0401 14 1 2.7083 2.6462 -6.0583 15 6 3.5676 1.5558 0.1342 16 6 3.3182 2.7538 1.0656 17 6 1.9471 2.1287 1.3730 18 1 -0.3633 -1.0229 0.0985 19 1 -0.3634 0.5968 0.8365 20 1 -0.3633 0.4262 -0.9352 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5137 0.8900 23 1 2.8397 3.7622 -1.1714 24 1 0.2507 3.6032 -4.4514 25 1 4.0691 1.8230 -0.7959 26 1 4.0265 0.7026 0.6338 27 1 3.9868 2.7848 1.9259 28 1 3.2556 3.7080 0.5424 29 1 1.9631 1.4322 2.2113 30 1 1.1404 2.8584 1.4430 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686138123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:11 Heat of formation + Delta-G solvation = -65.061649 kcal Electronic energy + Delta-G solvation = -12045.936149 eV Core-core repulsion = 10033.584426 eV Total energy + Delta-G solvation = -2012.351724 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.80558 -36.10586 -34.37206 -33.36682 -29.19325 -26.41891 -26.27351 -24.24076 -21.98487 -19.36554 -18.92158 -16.73772 -16.56450 -16.25935 -15.40464 -15.04853 -14.40725 -13.93643 -13.56240 -13.24900 -13.05122 -12.84542 -12.83733 -12.49521 -12.24691 -11.94573 -11.89036 -11.59094 -11.08592 -10.72890 -10.61201 -10.37123 -9.78279 -8.10370 -6.31654 1.38383 1.40844 1.51897 2.40672 3.16230 3.92714 3.99435 4.05913 4.18310 4.37111 4.49974 4.63211 4.81221 4.91060 4.96564 5.02324 5.18602 5.23533 5.30457 5.31971 5.41761 5.56701 5.59912 5.76012 5.86300 5.98828 6.19381 6.83413 7.39340 7.57743 8.94903 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044006 B = 0.015376 C = 0.014048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.129565 B = 1820.633899 C = 1992.684884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.106 4.106 4 C 0.251 3.749 5 H 0.023 0.977 6 O -0.582 6.582 7 C -0.557 4.557 8 H 0.058 0.942 9 C 0.022 3.978 10 N -0.908 5.908 11 Si 0.952 3.048 12 H -0.263 1.263 13 H -0.283 1.283 14 H -0.282 1.282 15 C -0.127 4.127 16 C -0.135 4.135 17 C -0.125 4.125 18 H 0.064 0.936 19 H 0.050 0.950 20 H 0.030 0.970 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.354 0.646 24 H 0.259 0.741 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -4.806 6.900 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.106 4.106 4 C 0.194 3.806 5 H 0.041 0.959 6 O -0.388 6.388 7 C -0.595 4.595 8 H 0.077 0.923 9 C -0.179 4.179 10 N -0.546 5.546 11 Si 0.777 3.223 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.208 1.208 15 C -0.164 4.164 16 C -0.172 4.172 17 C -0.162 4.162 18 H 0.083 0.917 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.067 0.933 22 H 0.090 0.910 23 H 0.200 0.800 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.518 -4.610 6.943 9.046 hybrid contribution 0.445 -0.176 -1.348 1.430 sum 3.963 -4.786 5.596 8.362 Atomic orbital electron populations 1.21655 0.96532 1.01130 1.00640 1.21262 0.95650 0.95183 1.00833 1.22541 0.96451 0.95909 0.95693 1.18963 0.93001 0.78398 0.90258 0.95899 1.86474 1.28166 1.31377 1.92764 1.21956 1.26151 1.19188 0.92210 0.92346 1.25864 0.94545 0.94746 1.02749 1.70200 1.30843 1.25938 1.27649 0.85622 0.78264 0.78488 0.79902 1.18710 1.20865 1.20787 1.22886 0.95677 0.98697 0.99182 1.22903 0.96765 0.98146 0.99371 1.22868 0.97552 0.99188 0.96636 0.91707 0.93115 0.95056 0.93315 0.91027 0.79995 0.93203 0.92989 0.89553 0.90717 0.90286 0.89414 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.26 71.98 0.67 -4.42 16 2 C -0.09 -3.30 5.12 30.59 0.16 -3.14 16 3 C -0.11 -4.17 0.51 -51.66 -0.03 -4.20 16 4 C 0.25 12.67 2.08 29.85 0.06 12.73 16 5 H 0.02 1.34 6.56 -2.39 -0.02 1.33 16 6 O -0.58 -29.99 11.03 -148.98 -1.64 -31.64 16 7 C -0.56 -30.00 7.46 25.60 0.19 -29.80 16 8 H 0.06 3.08 7.28 -2.92 -0.02 3.05 16 9 C 0.02 1.23 5.43 84.66 0.46 1.69 16 10 N -0.91 -54.54 13.06 21.45 0.28 -54.26 16 11 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 C -0.13 -4.42 6.67 31.12 0.21 -4.22 16 16 C -0.13 -4.39 7.46 31.12 0.23 -4.16 16 17 C -0.13 -4.34 6.72 31.12 0.21 -4.13 16 18 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 19 H 0.05 1.72 7.92 -2.39 -0.02 1.70 16 20 H 0.03 1.32 6.85 -2.38 -0.02 1.30 16 21 H 0.05 1.88 7.52 -2.39 -0.02 1.86 16 22 H 0.07 2.13 8.06 -2.39 -0.02 2.12 16 23 H 0.35 16.64 6.99 -74.06 -0.52 16.13 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.05 1.98 7.46 -2.39 -0.02 1.96 16 26 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 2.81 5.53 -2.39 -0.01 2.80 16 29 H 0.09 2.56 8.04 -2.39 -0.02 2.55 16 30 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -61.43 238.65 3.42 -58.01 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.60 Total: 21.87 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 2.16 Total: -39.65 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.26 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.64 Total: -31.64 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -61.43 3.42 -58.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.048 kcal (2) G-P(sol) polarization free energy of solvation -61.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds