Wall clock time and date at job start Mon Mar 30 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46828 * 2 1 4 4 C 1.42898 * 114.00043 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.55290 * 4.32990 * 4 3 2 6 6 C 1.53003 * 117.50322 * 218.62638 * 4 3 2 7 7 C 1.53000 * 59.99954 * 252.51014 * 6 4 3 8 8 H 1.09007 * 117.51617 * 252.51634 * 7 6 4 9 9 C 1.50700 * 117.50235 * 107.48586 * 7 6 4 10 10 O 1.21433 * 119.99900 * 321.37754 * 9 7 6 11 11 C 1.41023 * 119.99637 * 141.65218 * 9 7 6 12 12 H 1.08002 * 120.00538 * 359.72896 * 11 9 7 13 13 C 1.40465 * 119.99641 * 179.72479 * 11 9 7 14 14 N 1.30514 * 120.00101 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99779 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46839 * 90.00279 * 15 13 11 17 17 H 1.48500 * 109.46823 * 209.99845 * 15 13 11 18 18 H 1.48497 * 109.47130 * 330.00159 * 15 13 11 19 19 H 1.08997 * 109.47036 * 60.00181 * 1 2 3 20 20 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47211 * 299.99707 * 1 2 3 22 22 H 1.08997 * 109.47542 * 240.00472 * 2 1 3 23 23 H 1.08997 * 109.47535 * 119.99993 * 2 1 3 24 24 H 1.08992 * 117.50297 * 145.02165 * 6 4 3 25 25 H 1.09004 * 117.49130 * 359.97438 * 6 4 3 26 26 H 0.97004 * 120.00131 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9770 0.5199 -0.0733 6 6 4.0510 2.5731 0.8478 7 6 4.0425 2.6876 -0.6778 8 1 4.9911 2.5547 -1.1982 9 6 3.0965 3.6849 -1.2956 10 8 1.9864 3.8390 -0.8281 11 6 3.4985 4.4351 -2.4200 12 1 4.4858 4.2981 -2.8358 13 6 2.6147 5.3605 -2.9993 14 7 1.4218 5.5264 -2.4967 15 14 3.1470 6.3538 -4.4893 16 1 2.7930 5.6157 -5.7283 17 1 2.4551 7.6678 -4.4810 18 1 4.6158 6.5673 -4.4428 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 5.0053 2.3650 1.3316 25 1 3.3723 3.2194 1.4045 26 1 0.8116 6.1658 -2.8965 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709672975.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:48 Heat of formation + Delta-G solvation = -86.329249 kcal Electronic energy + Delta-G solvation = -11135.753201 eV Core-core repulsion = 8986.646151 eV Total energy + Delta-G solvation = -2149.107050 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.97152 -38.11893 -35.71361 -34.52622 -31.61595 -29.28812 -24.77043 -23.70630 -22.92733 -20.69716 -18.75530 -17.73902 -16.68060 -16.36365 -16.11064 -15.32081 -14.55178 -14.25251 -13.87712 -13.46010 -13.21123 -13.12588 -12.91766 -12.73316 -12.23095 -12.06167 -12.00032 -11.73603 -11.09689 -10.83357 -9.92141 -9.39046 -8.22004 -7.01802 1.35876 1.37122 1.54510 2.14089 2.23309 2.77245 2.96439 3.67575 3.93793 4.10322 4.20396 4.32775 4.47945 4.50709 4.61272 4.76229 4.92455 4.95774 5.02018 5.23687 5.25689 5.30207 6.02082 6.56054 6.77691 6.92490 8.39080 8.62764 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.053106 B = 0.011422 C = 0.010180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.117768 B = 2450.902816 C = 2749.810211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.371 6.371 4 C 0.037 3.963 5 H 0.145 0.855 6 C -0.162 4.162 7 C -0.219 4.219 8 H 0.123 0.877 9 C 0.364 3.636 10 O -0.574 6.574 11 C -0.568 4.568 12 H 0.083 0.917 13 C 0.023 3.977 14 N -0.796 5.796 15 Si 0.995 3.005 16 H -0.259 1.259 17 H -0.269 1.269 18 H -0.248 1.248 19 H 0.037 0.963 20 H 0.104 0.896 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.137 0.863 25 H 0.064 0.936 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 -8.128 1.212 9.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.290 6.290 4 C -0.021 4.021 5 H 0.163 0.837 6 C -0.199 4.199 7 C -0.238 4.238 8 H 0.141 0.859 9 C 0.260 3.740 10 O -0.465 6.465 11 C -0.599 4.599 12 H 0.101 0.899 13 C -0.194 4.194 14 N -0.425 5.425 15 Si 0.814 3.186 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.171 1.171 19 H 0.056 0.944 20 H 0.123 0.877 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.155 0.845 25 H 0.083 0.917 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.380 -7.858 1.488 8.683 hybrid contribution 0.177 0.453 -0.576 0.753 sum 3.558 -7.406 0.912 8.267 Atomic orbital electron populations 1.21731 0.93656 1.03242 1.01702 1.22768 0.96153 0.83286 1.00896 1.88196 1.19528 1.27339 1.93943 1.22796 0.82224 0.93757 1.03372 0.83736 1.23258 1.02620 1.01974 0.92083 1.23555 1.02295 1.01504 0.96476 0.85900 1.19488 0.86555 0.82513 0.85435 1.90378 1.23730 1.67687 1.64674 1.21329 1.02082 1.21961 1.14546 0.89892 1.27275 0.93737 0.97266 1.01154 1.70125 1.07073 1.27868 1.37435 0.85066 0.80008 0.77077 0.76450 1.18360 1.19347 1.17091 0.94388 0.87719 0.92896 0.92834 0.91220 0.84531 0.91685 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 10.28 71.98 0.74 -3.74 15 2 C 0.05 1.48 6.53 71.98 0.47 1.95 15 3 O -0.37 -17.16 8.94 -130.40 -1.17 -18.33 15 4 C 0.04 1.46 6.38 30.60 0.20 1.65 15 5 H 0.15 4.26 7.93 -2.39 -0.02 4.24 15 6 C -0.16 -6.45 10.04 30.60 0.31 -6.15 15 7 C -0.22 -10.21 6.06 -11.54 -0.07 -10.28 15 8 H 0.12 4.97 8.14 -2.38 -0.02 4.95 15 9 C 0.36 22.16 6.57 26.37 0.17 22.33 15 10 O -0.57 -39.87 13.89 15.08 0.21 -39.66 15 11 C -0.57 -33.59 9.22 23.50 0.22 -33.38 15 12 H 0.08 4.43 7.85 -2.91 -0.02 4.41 15 13 C 0.02 1.34 5.50 85.43 0.47 1.81 15 14 N -0.80 -49.59 11.72 21.91 0.26 -49.33 15 15 Si 1.00 41.38 29.56 68.60 2.03 43.41 15 16 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 17 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 18 H -0.25 -9.59 7.11 99.48 0.71 -8.89 15 19 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.14 4.01 8.14 -2.39 -0.02 3.99 15 25 H 0.06 3.02 8.13 -2.39 -0.02 3.00 15 26 H 0.28 15.54 8.29 -92.71 -0.77 14.77 15 Total: -1.00 -79.07 235.22 4.99 -74.08 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.16 Total: 15.61 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 2.50 Total: -25.79 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.26 Total: -49.33 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.96 Total: -57.99 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -79.07 4.99 -74.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709672975.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.245 kcal (2) G-P(sol) polarization free energy of solvation -79.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds