Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.46687 * 2 1 4 4 C 1.42903 * 113.99643 * 180.02562 * 3 2 1 5 5 H 1.08992 * 115.55412 * 4.32854 * 4 3 2 6 6 C 1.53006 * 117.51600 * 218.62506 * 4 3 2 7 7 C 1.52999 * 60.00089 * 252.52141 * 6 4 3 8 8 H 1.09002 * 117.49803 * 107.49109 * 7 6 4 9 9 C 1.50700 * 117.51845 * 252.51832 * 7 6 4 10 10 O 1.21441 * 119.99549 * 43.71905 * 9 7 6 11 11 C 1.41019 * 120.00203 * 223.71562 * 9 7 6 12 12 H 1.08003 * 119.99921 * 0.02562 * 11 9 7 13 13 C 1.40461 * 120.00186 * 180.02562 * 11 9 7 14 14 N 1.30526 * 120.00028 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00181 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47070 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47063 * 119.99797 * 15 13 11 18 18 H 1.48500 * 109.46984 * 239.99679 * 15 13 11 19 19 H 1.09001 * 109.46708 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47076 * 299.99713 * 1 2 3 21 21 H 1.09001 * 109.47229 * 60.00051 * 1 2 3 22 22 H 1.08997 * 109.47238 * 240.00287 * 2 1 3 23 23 H 1.08997 * 109.46943 * 119.99256 * 2 1 3 24 24 H 1.09003 * 117.49619 * 145.02838 * 6 4 3 25 25 H 1.08995 * 117.50015 * 0.02562 * 6 4 3 26 26 H 0.96997 * 120.00014 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5199 -0.0752 6 6 4.0522 2.5727 0.8464 7 6 4.0420 2.6878 -0.6792 8 1 3.3574 3.4094 -1.1250 9 6 5.3525 2.5041 -1.4002 10 8 6.1015 1.6040 -1.0783 11 6 5.7091 3.3773 -2.4485 12 1 5.0431 4.1780 -2.7344 13 6 6.9304 3.2058 -3.1207 14 7 7.7355 2.2384 -2.7748 15 14 7.4031 4.3629 -4.5089 16 1 6.3274 5.3682 -4.7033 17 1 8.6710 5.0556 -4.1659 18 1 7.5868 3.5853 -5.7606 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 5.0070 2.3641 1.3290 25 1 3.3744 3.2185 1.4045 26 1 8.5791 2.1202 -3.2388 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709672976.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -69.956515 kcal Electronic energy + Delta-G solvation = -10858.538261 eV Core-core repulsion = 8710.141186 eV Total energy + Delta-G solvation = -2148.397075 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.31703 -36.58128 -34.00320 -32.49251 -30.46956 -27.22868 -22.90426 -22.57881 -21.37909 -18.81090 -16.95027 -15.94174 -15.24179 -15.15242 -14.38962 -13.70296 -12.89821 -12.52812 -12.43329 -12.11807 -11.66958 -11.43774 -11.24904 -11.06741 -10.70775 -10.51336 -10.31067 -10.18640 -9.46050 -8.92088 -8.48687 -7.39453 -6.24660 -4.88792 3.04255 3.14987 3.20476 3.86446 4.04108 4.10367 4.76385 5.22221 5.34642 5.47269 5.55828 5.71907 5.79191 5.95222 6.06262 6.14340 6.24900 6.36357 6.40745 6.73448 6.99488 7.27001 7.77880 8.12577 8.82916 8.91051 10.35034 10.58353 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.069463 B = 0.008804 C = 0.008559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.995279 B = 3179.587835 C = 3270.537727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.025 3.975 5 H 0.112 0.888 6 C -0.171 4.171 7 C -0.178 4.178 8 H 0.101 0.899 9 C 0.387 3.613 10 O -0.548 6.548 11 C -0.524 4.524 12 H 0.071 0.929 13 C 0.081 3.919 14 N -0.740 5.740 15 Si 0.907 3.093 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.274 1.274 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 -1.164 2.272 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.283 6.283 4 C -0.032 4.032 5 H 0.130 0.870 6 C -0.209 4.209 7 C -0.198 4.198 8 H 0.119 0.881 9 C 0.282 3.718 10 O -0.438 6.438 11 C -0.556 4.556 12 H 0.089 0.911 13 C -0.142 4.142 14 N -0.369 5.369 15 Si 0.731 3.269 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.199 1.199 19 H 0.086 0.914 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.623 -1.553 2.441 8.154 hybrid contribution 0.225 0.527 -0.696 0.901 sum -7.398 -1.026 1.745 7.670 Atomic orbital electron populations 1.21741 0.94211 1.01828 1.02872 1.22443 0.94909 0.84416 1.00127 1.87760 1.20305 1.25901 1.94374 1.22660 0.80002 0.95081 1.05503 0.87001 1.23234 1.01713 1.01894 0.94025 1.23708 1.02200 0.99335 0.94541 0.88120 1.18828 0.83389 0.85648 0.83936 1.90388 1.52181 1.34459 1.66755 1.20791 1.03460 1.14747 1.16560 0.91094 1.26045 0.95869 0.94901 0.97373 1.69970 1.07566 1.25112 1.34214 0.86319 0.79197 0.80753 0.80648 1.18374 1.19880 1.19886 0.91393 0.92132 0.91932 0.93286 0.93603 0.88401 0.89341 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 37.16 0.38 -1.40 15 2 C 0.06 0.88 6.53 37.16 0.24 1.12 15 3 O -0.36 -7.05 10.60 -35.23 -0.37 -7.42 15 4 C 0.03 0.54 5.96 -26.73 -0.16 0.38 15 5 H 0.11 2.48 7.67 -51.93 -0.40 2.08 15 6 C -0.17 -3.58 10.09 -26.73 -0.27 -3.84 15 7 C -0.18 -4.26 6.01 -91.77 -0.55 -4.81 15 8 H 0.10 2.30 8.14 -51.93 -0.42 1.88 15 9 C 0.39 11.17 6.66 -33.26 -0.22 10.95 15 10 O -0.55 -17.52 14.95 5.42 0.08 -17.43 15 11 C -0.52 -14.95 9.22 -37.69 -0.35 -15.30 15 12 H 0.07 1.88 7.85 -52.48 -0.41 1.47 15 13 C 0.08 2.23 5.50 -17.27 -0.10 2.14 15 14 N -0.74 -21.64 11.72 55.57 0.65 -20.99 15 15 Si 0.91 19.71 29.56 -169.99 -5.03 14.68 15 16 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 19 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.10 2.09 8.14 -51.93 -0.42 1.67 15 25 H 0.09 1.63 8.14 -51.93 -0.42 1.21 15 26 H 0.27 7.11 8.29 -40.82 -0.34 6.77 15 LS Contribution 237.37 15.07 3.58 3.58 Total: -1.00 -32.37 237.37 -5.44 -37.80 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.33 Total: 0.56 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.02 Total: -10.77 kcal Atomic # 7 Polarization: -21.64 SS G_CDS: 0.65 Total: -20.99 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.29 Total: -24.85 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.37 -5.44 -37.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709672976.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.152 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds