Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.46687 * 2 1 4 4 C 1.42903 * 113.99643 * 180.02562 * 3 2 1 5 5 H 1.08992 * 115.55412 * 4.32854 * 4 3 2 6 6 C 1.53006 * 117.51600 * 218.62506 * 4 3 2 7 7 C 1.52999 * 60.00089 * 252.52141 * 6 4 3 8 8 H 1.09002 * 117.49803 * 107.49109 * 7 6 4 9 9 C 1.50700 * 117.51845 * 252.51832 * 7 6 4 10 10 O 1.21441 * 119.99549 * 43.71905 * 9 7 6 11 11 C 1.41019 * 120.00203 * 223.71562 * 9 7 6 12 12 H 1.08003 * 119.99921 * 0.02562 * 11 9 7 13 13 C 1.40461 * 120.00186 * 180.02562 * 11 9 7 14 14 N 1.30526 * 120.00028 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00181 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47070 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47063 * 119.99797 * 15 13 11 18 18 H 1.48500 * 109.46984 * 239.99679 * 15 13 11 19 19 H 1.09001 * 109.46708 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47076 * 299.99713 * 1 2 3 21 21 H 1.09001 * 109.47229 * 60.00051 * 1 2 3 22 22 H 1.08997 * 109.47238 * 240.00287 * 2 1 3 23 23 H 1.08997 * 109.46943 * 119.99256 * 2 1 3 24 24 H 1.09003 * 117.49619 * 145.02838 * 6 4 3 25 25 H 1.08995 * 117.50015 * 0.02562 * 6 4 3 26 26 H 0.96997 * 120.00014 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5199 -0.0752 6 6 4.0522 2.5727 0.8464 7 6 4.0420 2.6878 -0.6792 8 1 3.3574 3.4094 -1.1250 9 6 5.3525 2.5041 -1.4002 10 8 6.1015 1.6040 -1.0783 11 6 5.7091 3.3773 -2.4485 12 1 5.0431 4.1780 -2.7344 13 6 6.9304 3.2058 -3.1207 14 7 7.7355 2.2384 -2.7748 15 14 7.4031 4.3629 -4.5089 16 1 6.3274 5.3682 -4.7033 17 1 8.6710 5.0556 -4.1659 18 1 7.5868 3.5853 -5.7606 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 5.0070 2.3641 1.3290 25 1 3.3744 3.2185 1.4045 26 1 8.5791 2.1202 -3.2388 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709672976.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -91.842431 kcal Electronic energy + Delta-G solvation = -10859.487306 eV Core-core repulsion = 8710.141186 eV Total energy + Delta-G solvation = -2149.346120 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.08922 -38.44404 -35.77139 -34.62886 -31.67097 -29.39883 -24.86209 -23.77020 -23.03683 -20.80631 -18.81160 -17.87834 -17.03042 -16.48461 -16.10578 -15.43757 -14.79927 -14.35252 -13.81122 -13.48497 -13.28426 -13.18429 -12.98352 -12.76245 -12.33194 -12.12101 -12.04209 -11.79722 -11.28159 -10.98230 -10.16664 -9.55858 -8.33899 -7.13151 1.31740 1.37599 1.56258 1.99988 2.20520 2.49477 2.87997 3.56228 3.98233 4.00833 4.16572 4.25683 4.43183 4.46149 4.52243 4.66462 4.84819 4.95771 5.01721 5.17590 5.19140 5.26098 5.96179 6.25684 6.68497 6.76497 8.23041 8.47454 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.069463 B = 0.008804 C = 0.008559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.995279 B = 3179.587835 C = 3270.537727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 O -0.371 6.371 4 C 0.041 3.959 5 H 0.098 0.902 6 C -0.150 4.150 7 C -0.203 4.203 8 H 0.109 0.891 9 C 0.363 3.637 10 O -0.595 6.595 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.025 3.975 14 N -0.788 5.788 15 Si 0.998 3.002 16 H -0.248 1.248 17 H -0.262 1.262 18 H -0.263 1.263 19 H 0.097 0.903 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 -0.302 1.817 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 O -0.291 6.291 4 C -0.018 4.018 5 H 0.116 0.884 6 C -0.187 4.187 7 C -0.223 4.223 8 H 0.127 0.873 9 C 0.262 3.738 10 O -0.489 6.489 11 C -0.587 4.587 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.417 5.417 15 Si 0.816 3.184 16 H -0.171 1.171 17 H -0.187 1.187 18 H -0.187 1.187 19 H 0.115 0.885 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.138 0.862 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.696 -0.691 1.998 8.949 hybrid contribution 0.504 0.188 -0.524 0.751 sum -8.192 -0.503 1.474 8.339 Atomic orbital electron populations 1.21752 0.91356 1.03820 1.02997 1.22820 0.97188 0.82557 1.00627 1.87750 1.18437 1.28588 1.94293 1.22399 0.81295 0.93817 1.04249 0.88399 1.23263 1.01833 1.01635 0.91989 1.23419 1.00604 1.01831 0.96411 0.87273 1.19477 0.84859 0.85035 0.84387 1.90341 1.54160 1.36103 1.68247 1.21319 1.04748 1.15350 1.17237 0.89758 1.27290 0.95160 0.96644 1.00286 1.70086 1.08407 1.27185 1.35976 0.84979 0.79251 0.77995 0.76198 1.17114 1.18662 1.18724 0.88482 0.91520 0.92275 0.93734 0.92265 0.89319 0.86153 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.28 71.98 0.74 -2.29 15 2 C 0.04 1.27 6.53 71.98 0.47 1.74 15 3 O -0.37 -13.88 10.60 -148.98 -1.58 -15.45 15 4 C 0.04 1.73 5.96 30.60 0.18 1.91 15 5 H 0.10 4.44 7.67 -2.39 -0.02 4.42 15 6 C -0.15 -6.14 10.09 30.60 0.31 -5.83 15 7 C -0.20 -9.78 6.01 -11.54 -0.07 -9.85 15 8 H 0.11 4.97 8.14 -2.39 -0.02 4.95 15 9 C 0.36 21.58 6.66 26.37 0.18 21.76 15 10 O -0.59 -39.51 14.95 -3.53 -0.05 -39.57 15 11 C -0.56 -32.14 9.22 23.49 0.22 -31.93 15 12 H 0.08 4.47 7.85 -2.91 -0.02 4.45 15 13 C 0.03 1.39 5.50 85.43 0.47 1.86 15 14 N -0.79 -46.99 11.72 21.91 0.26 -46.73 15 15 Si 1.00 40.00 29.56 68.60 2.03 42.03 15 16 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 19 H 0.10 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.07 1.35 8.14 -2.38 -0.02 1.33 15 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.09 3.80 8.14 -2.39 -0.02 3.78 15 25 H 0.12 4.13 8.14 -2.39 -0.02 4.11 15 26 H 0.28 14.96 8.29 -92.71 -0.77 14.19 15 Total: -1.00 -71.06 237.37 4.30 -66.76 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.16 Total: 15.59 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 2.49 Total: -22.62 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.26 Total: -46.73 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -1.63 Total: -55.02 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -71.06 4.30 -66.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709672976.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.085 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds