Wall clock time and date at job start Mon Mar 30 2020 02:15:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 119.99812 * 2 1
4 4 H 1.48506 * 109.46868 * 269.99746 * 3 2 1
5 5 H 1.48497 * 109.47484 * 29.99637 * 3 2 1
6 6 H 1.48497 * 109.47229 * 149.99934 * 3 2 1
7 7 C 1.37871 * 120.00060 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99841 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99959 * 0.02562 * 7 2 1
10 10 O 1.42901 * 109.46955 * 179.97438 * 9 7 2
11 11 C 1.42905 * 114.00134 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 9
13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10
14 14 C 1.53001 * 109.47486 * 180.02562 * 13 12 11
15 15 C 1.52997 * 117.49686 * 243.74811 * 14 13 12
16 16 C 1.52996 * 117.50161 * 175.08776 * 14 13 12
17 17 H 0.97007 * 120.00409 * 0.02562 * 1 2 3
18 18 H 1.08994 * 109.47512 * 59.99846 * 9 7 2
19 19 H 1.09002 * 109.46988 * 299.99293 * 9 7 2
20 20 H 1.09001 * 109.47103 * 300.00246 * 11 10 9
21 21 H 1.09004 * 109.47054 * 59.99750 * 11 10 9
22 22 H 1.09001 * 109.46832 * 299.99892 * 12 11 10
23 23 H 1.08992 * 109.47303 * 59.99596 * 12 11 10
24 24 H 1.09001 * 109.46997 * 299.99574 * 13 12 11
25 25 H 1.09004 * 109.47298 * 59.99717 * 13 12 11
26 26 H 1.09000 * 115.55009 * 29.41004 * 14 13 12
27 27 H 1.08994 * 117.50362 * 359.97438 * 15 14 13
28 28 H 1.09009 * 117.49753 * 145.01792 * 15 14 13
29 29 H 1.09008 * 117.49738 * 214.98185 * 16 14 13
30 30 H 1.08994 * 117.49813 * 359.97438 * 16 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 8 2.1797 -3.5852 0.0005
11 6 1.5652 -4.8754 0.0011
12 6 2.6481 -5.9561 0.0004
13 6 1.9902 -7.3374 0.0004
14 6 3.0731 -8.4182 0.0003
15 6 3.1490 -9.3421 -1.2168
16 6 2.6180 -9.8743 0.1165
17 1 -0.4851 0.8401 -0.0004
18 1 0.6247 -2.5571 -0.8896
19 1 0.6241 -2.5567 0.8904
20 1 0.9453 -4.9822 0.8913
21 1 0.9447 -4.9827 -0.8886
22 1 3.2676 -5.8491 -0.8901
23 1 3.2689 -5.8490 0.8898
24 1 1.3705 -7.4447 0.8907
25 1 1.3696 -7.4443 -0.8893
26 1 4.0111 -8.1440 0.4832
27 1 2.4273 -9.1803 -2.0174
28 1 4.1369 -9.6760 -1.5344
29 1 3.2568 -10.5582 0.6757
30 1 1.5472 -10.0623 0.1934
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000711546358.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:15:34
Heat of formation + Delta-G solvation = -48.883035 kcal
Electronic energy + Delta-G solvation = -10623.893343 eV
Core-core repulsion = 8612.243177 eV
Total energy + Delta-G solvation = -2011.650166 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 184.120 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-37.87981 -36.61609 -33.09592 -32.20719 -27.58185 -25.61099 -22.48356 -22.25946
-21.25639 -20.39002 -16.37659 -15.88292 -15.41129 -15.06310 -14.54210 -14.10788
-13.61369 -13.12078 -12.05685 -11.90772 -11.76662 -11.58514 -11.24453 -10.93399
-10.81151 -10.50867 -10.46086 -10.28180 -9.92770 -9.84291 -9.08265 -8.79490
-8.14764 -6.09263 -4.11045 3.31715 3.36405 3.42124 3.72497 4.33980
4.52682 4.83856 4.86902 5.13665 5.24595 5.27057 5.42087 5.52402
5.67291 5.77847 5.93338 5.97838 6.01671 6.05502 6.21152 6.25301
6.55675 6.58792 7.13773 7.45277 7.81469 8.17597 8.61712 9.02891
9.53900 11.02368
Molecular weight = 184.12amu
Principal moments of inertia in cm(-1)
A = 0.125635 B = 0.005619 C = 0.005483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 222.814650 B = 4982.002100 C = 5105.876323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.056 3.944
3 Si 0.909 3.091
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.271 1.271
7 C -0.515 4.515
8 H 0.066 0.934
9 C 0.194 3.806
10 O -0.399 6.399
11 C 0.062 3.938
12 C -0.113 4.113
13 C -0.087 4.087
14 C -0.148 4.148
15 C -0.183 4.183
16 C -0.185 4.185
17 H 0.264 0.736
18 H 0.005 0.995
19 H 0.005 0.995
20 H 0.035 0.965
21 H 0.034 0.966
22 H 0.067 0.933
23 H 0.067 0.933
24 H 0.066 0.934
25 H 0.063 0.937
26 H 0.105 0.895
27 H 0.093 0.907
28 H 0.091 0.909
29 H 0.091 0.909
30 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.533 -14.825 -0.373 15.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.145 4.145
3 Si 0.736 3.264
4 H -0.204 1.204
5 H -0.211 1.211
6 H -0.196 1.196
7 C -0.554 4.554
8 H 0.085 0.915
9 C 0.120 3.880
10 O -0.319 6.319
11 C -0.015 4.015
12 C -0.151 4.151
13 C -0.124 4.124
14 C -0.166 4.166
15 C -0.220 4.220
16 C -0.222 4.222
17 H 0.073 0.927
18 H 0.023 0.977
19 H 0.023 0.977
20 H 0.053 0.947
21 H 0.052 0.948
22 H 0.086 0.914
23 H 0.085 0.915
24 H 0.084 0.916
25 H 0.082 0.918
26 H 0.123 0.877
27 H 0.112 0.888
28 H 0.109 0.891
29 H 0.109 0.891
30 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.574 -14.666 -0.369 15.100
hybrid contribution -0.011 0.826 -0.024 0.826
sum 3.562 -13.841 -0.392 14.297
Atomic orbital electron populations
1.69968 1.06126 1.27145 1.50620 1.24955 0.94982 0.99452 0.95137
0.86325 0.79663 0.82202 0.78235 1.20449 1.21066 1.19607 1.21080
0.94089 0.89419 1.50767 0.91537 1.20201 0.88790 0.83634 0.95375
1.87833 1.35701 1.13130 1.95201 1.22244 0.94823 0.85545 0.98914
1.21466 0.98463 0.92226 1.02942 1.21111 0.96389 0.92915 1.02030
1.22361 1.00985 0.90986 1.02242 1.23041 1.02493 1.04645 0.91785
1.22969 1.01425 0.97019 1.00824 0.92661 0.97743 0.97711 0.94702
0.94751 0.91410 0.91457 0.91555 0.91825 0.87736 0.88821 0.89085
0.89091 0.88918
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
3 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16
4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
7 C -0.52 -15.59 9.43 -34.44 -0.32 -15.91 16
8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16
9 C 0.19 5.53 5.69 36.01 0.20 5.74 16
10 O -0.40 -10.11 10.33 -35.23 -0.36 -10.48 16
11 C 0.06 1.22 5.94 37.16 0.22 1.44 16
12 C -0.11 -1.77 5.54 -26.73 -0.15 -1.91 16
13 C -0.09 -1.08 5.49 -26.73 -0.15 -1.23 16
14 C -0.15 -1.62 5.73 -90.62 -0.52 -2.14 16
15 C -0.18 -1.80 10.18 -26.70 -0.27 -2.07 16
16 C -0.19 -1.75 10.25 -26.70 -0.27 -2.03 16
17 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
18 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16
19 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16
20 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16
21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
23 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16
24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
25 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16
26 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16
27 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16
28 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16
29 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16
30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 259.72 15.07 3.91 3.91
Total: -1.00 -31.27 259.72 -7.11 -38.38
By element:
Atomic # 1 Polarization: -0.70 SS G_CDS: -5.02 Total: -5.72 kcal
Atomic # 6 Polarization: -15.21 SS G_CDS: -1.36 Total: -16.57 kcal
Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.62 kcal
Atomic # 8 Polarization: -10.11 SS G_CDS: -0.36 Total: -10.48 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -31.27 -7.11 -38.38 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000711546358.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.506 kcal
(2) G-P(sol) polarization free energy of solvation -31.268 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds