Wall clock time and date at job start Mon Mar 30 2020 02:15:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 119.99812 * 2 1
4 4 H 1.48506 * 109.46868 * 269.99746 * 3 2 1
5 5 H 1.48497 * 109.47484 * 29.99637 * 3 2 1
6 6 H 1.48497 * 109.47229 * 149.99934 * 3 2 1
7 7 C 1.37871 * 120.00060 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99841 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99959 * 0.02562 * 7 2 1
10 10 O 1.42901 * 109.46955 * 179.97438 * 9 7 2
11 11 C 1.42905 * 114.00134 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 9
13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10
14 14 C 1.53001 * 109.47486 * 180.02562 * 13 12 11
15 15 C 1.52997 * 117.49686 * 243.74811 * 14 13 12
16 16 C 1.52996 * 117.50161 * 175.08776 * 14 13 12
17 17 H 0.97007 * 120.00409 * 0.02562 * 1 2 3
18 18 H 1.08994 * 109.47512 * 59.99846 * 9 7 2
19 19 H 1.09002 * 109.46988 * 299.99293 * 9 7 2
20 20 H 1.09001 * 109.47103 * 300.00246 * 11 10 9
21 21 H 1.09004 * 109.47054 * 59.99750 * 11 10 9
22 22 H 1.09001 * 109.46832 * 299.99892 * 12 11 10
23 23 H 1.08992 * 109.47303 * 59.99596 * 12 11 10
24 24 H 1.09001 * 109.46997 * 299.99574 * 13 12 11
25 25 H 1.09004 * 109.47298 * 59.99717 * 13 12 11
26 26 H 1.09000 * 115.55009 * 29.41004 * 14 13 12
27 27 H 1.08994 * 117.50362 * 359.97438 * 15 14 13
28 28 H 1.09009 * 117.49753 * 145.01792 * 15 14 13
29 29 H 1.09008 * 117.49738 * 214.98185 * 16 14 13
30 30 H 1.08994 * 117.49813 * 359.97438 * 16 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 8 2.1797 -3.5852 0.0005
11 6 1.5652 -4.8754 0.0011
12 6 2.6481 -5.9561 0.0004
13 6 1.9902 -7.3374 0.0004
14 6 3.0731 -8.4182 0.0003
15 6 3.1490 -9.3421 -1.2168
16 6 2.6180 -9.8743 0.1165
17 1 -0.4851 0.8401 -0.0004
18 1 0.6247 -2.5571 -0.8896
19 1 0.6241 -2.5567 0.8904
20 1 0.9453 -4.9822 0.8913
21 1 0.9447 -4.9827 -0.8886
22 1 3.2676 -5.8491 -0.8901
23 1 3.2689 -5.8490 0.8898
24 1 1.3705 -7.4447 0.8907
25 1 1.3696 -7.4443 -0.8893
26 1 4.0111 -8.1440 0.4832
27 1 2.4273 -9.1803 -2.0174
28 1 4.1369 -9.6760 -1.5344
29 1 3.2568 -10.5582 0.6757
30 1 1.5472 -10.0623 0.1934
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000711546358.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:15:34
Heat of formation + Delta-G solvation = -67.561396 kcal
Electronic energy + Delta-G solvation = -10624.703298 eV
Core-core repulsion = 8612.243177 eV
Total energy + Delta-G solvation = -2012.460121 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 184.120 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.04710 -38.22309 -35.09011 -33.77844 -29.63795 -27.12137 -24.47236 -23.23642
-22.60925 -21.29859 -18.64641 -17.41238 -17.05363 -16.48486 -16.15258 -15.47145
-15.14193 -14.74343 -13.79156 -13.47774 -13.19457 -12.79654 -12.68616 -12.52015
-12.34880 -12.16913 -11.93246 -11.74664 -11.32103 -11.04705 -10.88112 -10.72558
-10.27356 -8.34124 -6.47533 1.39751 1.43062 1.55279 2.33955 2.91012
2.99502 3.12717 3.87273 3.99804 4.06710 4.15825 4.24353 4.45266
4.56882 4.69812 4.75495 4.81995 4.87815 4.94647 5.08772 5.11820
5.21190 5.28017 5.31829 5.44243 5.53487 5.92966 6.50688 6.78944
7.24831 8.78430
Molecular weight = 184.12amu
Principal moments of inertia in cm(-1)
A = 0.125635 B = 0.005619 C = 0.005483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 222.814650 B = 4982.002100 C = 5105.876323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.006 3.994
3 Si 0.987 3.013
4 H -0.267 1.267
5 H -0.273 1.273
6 H -0.264 1.264
7 C -0.553 4.553
8 H 0.062 0.938
9 C 0.207 3.793
10 O -0.415 6.415
11 C 0.051 3.949
12 C -0.103 4.103
13 C -0.079 4.079
14 C -0.164 4.164
15 C -0.183 4.183
16 C -0.175 4.175
17 H 0.272 0.728
18 H -0.014 1.014
19 H -0.013 1.013
20 H 0.041 0.959
21 H 0.039 0.961
22 H 0.064 0.936
23 H 0.066 0.934
24 H 0.071 0.929
25 H 0.067 0.933
26 H 0.104 0.896
27 H 0.094 0.906
28 H 0.100 0.900
29 H 0.104 0.896
30 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.267 -15.031 -0.398 15.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.192 4.192
3 Si 0.809 3.191
4 H -0.192 1.192
5 H -0.197 1.197
6 H -0.188 1.188
7 C -0.591 4.591
8 H 0.080 0.920
9 C 0.132 3.868
10 O -0.335 6.335
11 C -0.025 4.025
12 C -0.140 4.140
13 C -0.116 4.116
14 C -0.182 4.182
15 C -0.220 4.220
16 C -0.212 4.212
17 H 0.081 0.919
18 H 0.004 0.996
19 H 0.005 0.995
20 H 0.059 0.941
21 H 0.058 0.942
22 H 0.083 0.917
23 H 0.085 0.915
24 H 0.089 0.911
25 H 0.086 0.914
26 H 0.122 0.878
27 H 0.113 0.887
28 H 0.119 0.881
29 H 0.122 0.878
30 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 4.305 -14.905 -0.395 15.519
hybrid contribution -0.287 0.806 -0.018 0.856
sum 4.018 -14.098 -0.413 14.666
Atomic orbital electron populations
1.70073 1.07836 1.28786 1.50303 1.26005 0.96004 1.03510 0.93695
0.85132 0.78330 0.76704 0.78926 1.19160 1.19737 1.18823 1.21414
0.94170 0.90869 1.52645 0.91961 1.19865 0.88676 0.84741 0.93557
1.87790 1.35835 1.14656 1.95237 1.22626 0.96499 0.83979 0.99421
1.21419 0.97288 0.92577 1.02765 1.21026 0.96793 0.91318 1.02489
1.22293 1.00630 0.91438 1.03850 1.23135 1.03164 1.03905 0.91766
1.23058 1.02034 0.95707 1.00387 0.91926 0.99578 0.99528 0.94121
0.94238 0.91700 0.91531 0.91084 0.91430 0.87774 0.88740 0.88124
0.87805 0.88415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16
2 C 0.01 0.38 5.46 84.65 0.46 0.84 16
3 Si 0.99 44.87 29.54 68.60 2.03 46.89 16
4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16
5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16
7 C -0.55 -33.97 9.43 25.60 0.24 -33.73 16
8 H 0.06 3.77 7.81 -2.91 -0.02 3.75 16
9 C 0.21 12.11 5.69 71.24 0.41 12.52 16
10 O -0.41 -21.48 10.33 -148.98 -1.54 -23.02 16
11 C 0.05 2.02 5.94 71.98 0.43 2.45 16
12 C -0.10 -3.15 5.54 30.59 0.17 -2.98 16
13 C -0.08 -1.86 5.49 30.59 0.17 -1.69 16
14 C -0.16 -3.32 5.73 -10.80 -0.06 -3.38 16
15 C -0.18 -3.22 10.18 30.62 0.31 -2.91 16
16 C -0.18 -2.89 10.25 30.62 0.31 -2.58 16
17 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16
18 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16
19 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16
20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
21 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16
22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16
25 H 0.07 1.53 7.88 -2.38 -0.02 1.52 16
26 H 0.10 2.11 8.08 -2.39 -0.02 2.09 16
27 H 0.09 1.64 8.03 -2.39 -0.02 1.62 16
28 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16
29 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16
30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
Total: -1.00 -66.32 259.72 4.29 -62.03
By element:
Atomic # 1 Polarization: 1.01 SS G_CDS: 1.08 Total: 2.09 kcal
Atomic # 6 Polarization: -33.90 SS G_CDS: 2.44 Total: -31.46 kcal
Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.54 kcal
Atomic # 8 Polarization: -21.48 SS G_CDS: -1.54 Total: -23.02 kcal
Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal
Total: -66.32 4.29 -62.03 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000711546358.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.527 kcal
(2) G-P(sol) polarization free energy of solvation -66.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds