Wall clock time and date at job start Mon Mar 30 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52315 * 2 1 4 4 C 1.53183 * 109.52231 * 239.81647 * 2 1 3 5 5 C 1.53172 * 109.03276 * 297.07275 * 4 2 1 6 6 C 1.53093 * 109.16509 * 303.01635 * 5 4 2 7 7 H 1.08993 * 109.48588 * 297.62835 * 6 5 4 8 8 C 1.50707 * 109.49148 * 177.59741 * 6 5 4 9 9 H 1.08002 * 119.99871 * 0.05384 * 8 6 5 10 10 C 1.37878 * 119.99968 * 180.02562 * 8 6 5 11 11 N 1.31511 * 120.00006 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99949 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47474 * 89.99368 * 12 10 8 14 14 H 1.48494 * 109.46861 * 209.99525 * 12 10 8 15 15 H 1.48506 * 109.46940 * 329.99622 * 12 10 8 16 16 O 1.42911 * 109.41339 * 57.61062 * 6 5 4 17 17 C 1.42896 * 114.09780 * 298.84385 * 16 6 5 18 18 H 1.09002 * 109.47153 * 299.87042 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.87233 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.87214 * 1 2 3 21 21 H 1.08999 * 109.47031 * 60.00272 * 3 2 1 22 22 H 1.09004 * 109.47284 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.47316 * 300.00450 * 3 2 1 24 24 H 1.08991 * 109.54336 * 56.93912 * 4 2 1 25 25 H 1.09002 * 109.54245 * 177.21091 * 4 2 1 26 26 H 1.09009 * 109.52195 * 183.11528 * 5 4 2 27 27 H 1.08994 * 109.57768 * 62.95501 * 5 4 2 28 28 H 0.97002 * 120.00058 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.48293 * 301.17275 * 17 16 6 30 30 H 1.08999 * 109.48358 * 181.13840 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0419 -0.7259 -1.2480 5 6 1.5877 -2.1878 -1.1971 6 6 2.0971 -2.8276 0.0971 7 1 3.1870 -2.8195 0.1021 8 6 1.6047 -4.2494 0.1829 9 1 0.9906 -4.6567 -0.6067 10 6 1.9386 -5.0302 1.2691 11 7 2.6872 -4.5345 2.2300 12 14 1.3288 -6.7927 1.3751 13 1 2.3168 -7.6978 0.7349 14 1 1.1601 -7.1731 2.8006 15 1 0.0247 -6.9083 0.6742 16 8 1.6099 -2.0861 1.2174 17 6 2.0416 -0.7242 1.2480 18 1 -0.3633 0.5118 0.8912 19 1 -0.3633 -1.0277 -0.0023 20 1 -0.3634 0.5158 -0.8889 21 1 1.6785 1.9562 0.8900 22 1 3.1313 1.4411 -0.0005 23 1 1.6784 1.9563 -0.8899 24 1 1.6356 -0.2487 -2.1397 25 1 3.1307 -0.6831 -1.2738 26 1 1.9941 -2.7256 -2.0538 27 1 0.4990 -2.2331 -1.2217 28 1 2.9225 -5.0839 2.9940 29 1 3.1309 -0.6885 1.2680 30 1 1.6454 -0.2372 2.1389 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713620907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:19 Heat of formation + Delta-G solvation = -70.406905 kcal Electronic energy + Delta-G solvation = -11922.457731 eV Core-core repulsion = 9909.874220 eV Total energy + Delta-G solvation = -2012.583511 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.71635 -34.31582 -32.45507 -30.99566 -26.90614 -26.77372 -24.74264 -23.04619 -20.63646 -17.92063 -16.55474 -14.82960 -14.69597 -14.34915 -14.14070 -13.47611 -13.15058 -12.42379 -11.82566 -11.79446 -11.69062 -11.24833 -11.16138 -10.90806 -10.70681 -10.44285 -10.15097 -9.99335 -9.66606 -9.38692 -8.82377 -8.43557 -7.77753 -5.97177 -4.09206 3.32977 3.39591 3.43280 4.45068 5.10768 5.28531 5.33940 5.43391 5.79296 5.89980 5.98341 6.07136 6.17832 6.20715 6.28974 6.31784 6.46190 6.57454 6.62534 6.72845 6.76773 6.99314 7.01712 7.05405 7.57873 7.94160 8.34254 8.83555 9.20220 9.61205 11.10880 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.073498 B = 0.011874 C = 0.011325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.870191 B = 2357.522475 C = 2471.809567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.144 4.144 6 C 0.218 3.782 7 H 0.011 0.989 8 C -0.527 4.527 9 H 0.063 0.937 10 C 0.077 3.923 11 N -0.863 5.863 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 O -0.355 6.355 17 C 0.070 3.930 18 H 0.046 0.954 19 H 0.069 0.931 20 H 0.041 0.959 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 7.706 -3.852 8.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.146 4.146 5 C -0.182 4.182 6 C 0.163 3.837 7 H 0.029 0.971 8 C -0.564 4.564 9 H 0.081 0.919 10 C -0.129 4.129 11 N -0.499 5.499 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.197 1.197 16 O -0.274 6.274 17 C -0.009 4.009 18 H 0.065 0.935 19 H 0.088 0.912 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.448 7.584 -3.539 8.494 hybrid contribution -0.089 -0.705 -0.077 0.715 sum -1.537 6.879 -3.616 7.922 Atomic orbital electron populations 1.21760 0.94569 1.02705 0.99881 1.21227 0.96411 0.94784 0.97854 1.21792 1.00579 0.96053 1.00956 1.21658 0.99804 0.96976 0.96120 1.22288 1.01069 0.93805 1.01029 1.19676 0.93529 0.89696 0.80844 0.97115 1.21020 1.34525 0.94238 1.06638 0.91894 1.25076 0.94191 0.98216 0.95395 1.70042 1.34908 1.36055 1.08871 0.86622 0.79368 0.84810 0.77304 1.20591 1.21108 1.19735 1.88335 1.73052 1.17700 1.48291 1.22301 0.97041 0.86711 0.94829 0.93537 0.91156 0.93999 0.93048 0.93071 0.93244 0.93329 0.92832 0.92719 0.92251 0.93028 0.95205 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.08 37.16 0.30 -1.96 16 2 C -0.10 -1.82 0.78 -154.37 -0.12 -1.94 16 3 C -0.14 -1.96 8.49 37.16 0.32 -1.65 16 4 C -0.11 -1.98 4.81 -26.55 -0.13 -2.11 16 5 C -0.14 -3.13 4.99 -26.59 -0.13 -3.26 16 6 C 0.22 5.78 2.50 -27.83 -0.07 5.71 16 7 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 8 C -0.53 -15.13 8.80 -34.44 -0.30 -15.43 16 9 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 10 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 11 N -0.86 -26.02 12.84 55.43 0.71 -25.31 16 12 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 O -0.36 -9.46 9.22 -35.23 -0.32 -9.78 16 17 C 0.07 1.48 5.54 37.21 0.21 1.68 16 18 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 19 H 0.07 1.38 6.13 -51.93 -0.32 1.06 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.14 8.14 -51.92 -0.42 0.71 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 240.67 15.07 3.63 3.63 Total: -1.00 -30.29 240.67 -5.89 -36.18 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -4.85 Total: -4.55 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.03 Total: -16.83 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.71 Total: -25.31 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.32 Total: -9.78 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.29 -5.89 -36.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713620907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.231 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds