Wall clock time and date at job start Mon Mar 30 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.52379 * 2 1 4 4 C 1.53181 * 109.52160 * 239.80922 * 2 1 3 5 5 C 1.53182 * 109.04721 * 183.12119 * 4 2 1 6 6 C 1.53089 * 109.15910 * 56.96331 * 5 4 2 7 7 H 1.08996 * 109.48460 * 62.40189 * 6 5 4 8 8 C 1.50702 * 109.47713 * 182.41945 * 6 5 4 9 9 H 1.08002 * 120.00299 * 359.97438 * 8 6 5 10 10 C 1.37884 * 119.99942 * 179.69825 * 8 6 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 6 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 6 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 O 1.42905 * 109.42751 * 302.40954 * 6 5 4 17 17 C 1.42899 * 114.09849 * 61.15262 * 16 6 5 18 18 H 1.09001 * 109.46873 * 299.87182 * 1 2 3 19 19 H 1.09000 * 109.47015 * 59.87338 * 1 2 3 20 20 H 1.09001 * 109.47237 * 179.87192 * 1 2 3 21 21 H 1.09001 * 109.46984 * 180.12810 * 3 2 1 22 22 H 1.09000 * 109.47027 * 300.12176 * 3 2 1 23 23 H 1.08995 * 109.47419 * 60.12583 * 3 2 1 24 24 H 1.09000 * 109.54235 * 302.98183 * 4 2 1 25 25 H 1.08999 * 109.54354 * 63.16095 * 4 2 1 26 26 H 1.08998 * 109.51078 * 297.06649 * 5 4 2 27 27 H 1.08997 * 109.53252 * 176.87580 * 5 4 2 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.47655 * 58.82726 * 17 16 6 30 30 H 1.08999 * 109.48237 * 178.85711 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0419 -0.7260 -1.2479 5 6 3.5716 -0.7882 -1.1979 6 6 4.0043 -1.4817 0.0965 7 1 3.6317 -2.5060 0.1022 8 6 5.5089 -1.4938 0.1814 9 1 6.0979 -1.0518 -0.6086 10 6 6.1333 -2.0642 1.2704 11 7 5.4160 -2.6026 2.2322 12 14 7.9981 -2.0724 1.3792 13 1 8.5670 -1.4088 0.1788 14 1 8.4260 -1.3403 2.5984 15 1 8.4839 -3.4740 1.4475 16 8 3.4694 -0.7737 1.2167 17 6 2.0416 -0.7242 1.2480 18 1 -0.3633 0.5119 0.8912 19 1 -0.3633 0.5158 -0.8888 20 1 -0.3634 -1.0277 -0.0023 21 1 3.1313 1.4410 -0.0023 22 1 1.6767 1.9568 -0.8889 23 1 1.6803 1.9555 0.8910 24 1 1.6367 -1.7376 -1.2732 25 1 1.7266 -0.1846 -2.1398 26 1 3.9780 0.2229 -1.2229 27 1 3.9416 -1.3517 -2.0544 28 1 5.8554 -3.0042 2.9982 29 1 1.6432 -1.7385 1.2687 30 1 1.7159 -0.1874 2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713620909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:21 Heat of formation + Delta-G solvation = -70.432791 kcal Electronic energy + Delta-G solvation = -11922.944610 eV Core-core repulsion = 9910.359976 eV Total energy + Delta-G solvation = -2012.584634 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.71639 -34.31786 -32.45456 -30.99593 -26.90575 -26.77692 -24.74334 -23.04735 -20.63684 -17.92236 -16.55678 -14.83204 -14.69635 -14.34663 -14.13924 -13.47538 -13.15541 -12.42364 -11.83135 -11.79560 -11.69033 -11.24806 -11.16234 -10.92120 -10.69671 -10.44039 -10.14931 -9.98715 -9.66856 -9.38630 -8.81570 -8.44135 -7.77906 -5.97405 -4.09279 3.32241 3.39943 3.43891 4.45024 5.10629 5.28444 5.33867 5.43326 5.79188 5.89954 5.98304 6.07050 6.17862 6.20649 6.28882 6.31805 6.46151 6.57391 6.62505 6.72860 6.76663 6.99279 7.01707 7.05306 7.57914 7.94159 8.34222 8.83657 9.20211 9.61154 11.10690 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.073427 B = 0.011880 C = 0.011332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.239142 B = 2356.345242 C = 2470.266297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.132 4.132 4 C -0.108 4.108 5 C -0.144 4.144 6 C 0.218 3.782 7 H 0.011 0.989 8 C -0.526 4.526 9 H 0.063 0.937 10 C 0.077 3.923 11 N -0.862 5.862 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 O -0.355 6.355 17 C 0.070 3.930 18 H 0.050 0.950 19 H 0.048 0.952 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.259 0.741 29 H 0.030 0.970 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 3.918 -3.865 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.189 4.189 4 C -0.146 4.146 5 C -0.182 4.182 6 C 0.162 3.838 7 H 0.029 0.971 8 C -0.564 4.564 9 H 0.082 0.918 10 C -0.129 4.129 11 N -0.499 5.499 12 Si 0.719 3.281 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.210 1.210 16 O -0.274 6.274 17 C -0.009 4.009 18 H 0.069 0.931 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.664 3.908 -3.558 8.506 hybrid contribution 0.688 -0.142 -0.058 0.705 sum -5.976 3.766 -3.616 7.935 Atomic orbital electron populations 1.21793 0.95490 1.01147 1.00955 1.21226 0.94488 0.96705 0.97854 1.21755 1.02660 0.94606 0.99884 1.21661 0.97575 0.99211 0.96118 1.22287 0.93290 1.01566 1.01032 1.19682 0.93374 0.89882 0.80845 0.97112 1.21068 0.89857 1.38956 1.06473 0.91836 1.25082 0.98185 0.94223 0.95412 1.70056 1.35011 1.36071 1.08727 0.86567 0.85744 0.77661 0.78161 1.19620 1.20860 1.20951 1.88335 1.14543 1.76193 1.48301 1.22301 0.86563 0.97191 0.94828 0.93052 0.93241 0.93071 0.91162 0.93998 0.93533 0.92844 0.93332 0.92259 0.92704 0.93088 0.95205 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.49 37.16 0.32 -1.65 16 2 C -0.10 -1.82 0.77 -154.37 -0.12 -1.94 16 3 C -0.13 -2.25 8.08 37.15 0.30 -1.95 16 4 C -0.11 -1.98 4.81 -26.54 -0.13 -2.11 16 5 C -0.14 -3.12 5.00 -26.59 -0.13 -3.26 16 6 C 0.22 5.77 2.50 -27.84 -0.07 5.70 16 7 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 8 C -0.53 -15.11 8.80 -34.44 -0.30 -15.41 16 9 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 10 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 11 N -0.86 -26.02 12.83 55.43 0.71 -25.30 16 12 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 O -0.36 -9.45 9.21 -35.23 -0.32 -9.78 16 17 C 0.07 1.48 5.54 37.21 0.21 1.68 16 18 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 1.38 6.14 -51.93 -0.32 1.06 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 240.67 15.07 3.63 3.63 Total: -1.00 -30.31 240.67 -5.89 -36.20 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -4.85 Total: -4.58 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.03 Total: -16.82 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.71 Total: -25.30 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.32 Total: -9.78 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.31 -5.89 -36.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713620909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.234 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds