Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00103 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00096 * 3 2 1 7 7 C 1.38946 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99952 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00443 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99823 * 180.02562 * 10 9 7 13 13 H 1.09006 * 115.54990 * 325.58481 * 12 10 9 14 14 C 1.53002 * 117.49818 * 111.25204 * 12 10 9 15 15 C 1.52997 * 117.50130 * 179.91623 * 12 10 9 16 16 H 1.09000 * 117.50337 * 144.99889 * 15 12 10 17 17 C 1.53001 * 117.49629 * 359.97438 * 15 12 10 18 18 N 1.46902 * 109.47229 * 175.00140 * 17 15 12 19 19 H 0.96993 * 120.00098 * 179.97438 * 1 2 3 20 20 H 0.96996 * 119.99546 * 0.02562 * 9 7 2 21 21 H 1.08999 * 117.49898 * 214.97566 * 14 12 10 22 22 H 1.08990 * 117.49866 * 0.02562 * 14 12 10 23 23 H 1.08998 * 109.47552 * 295.00482 * 17 15 12 24 24 H 1.09004 * 109.47212 * 55.00409 * 17 15 12 25 25 H 1.00902 * 111.00272 * 180.02562 * 18 17 15 26 26 H 1.00898 * 110.99899 * 303.95590 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 1.2125 6 1 1.8894 2.3965 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 1 0.3062 -4.8648 0.5540 14 6 1.3160 -5.7199 -1.2676 15 6 2.0657 -6.1533 -0.0053 16 1 1.6692 -7.0041 0.5487 17 6 3.5899 -6.0199 -0.0083 18 7 4.1983 -7.3518 0.1096 19 1 -0.4850 -0.8400 -0.0004 20 1 0.3534 -2.3906 -0.0005 21 1 0.4264 -6.2858 -1.5437 22 1 1.9089 -5.3399 -2.0995 23 1 3.9122 -5.5544 -0.9397 24 1 3.9022 -5.4021 0.8337 25 1 5.2054 -7.2906 0.1104 26 1 3.8648 -7.8301 0.9331 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715099136.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = -18.680785 kcal Electronic energy + Delta-G solvation = -11039.426565 eV Core-core repulsion = 8925.545723 eV Total energy + Delta-G solvation = -2113.880842 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.06569 -36.35127 -34.15476 -33.10160 -31.01168 -25.63133 -24.62970 -22.80018 -20.62723 -19.12336 -17.84938 -16.41502 -15.65179 -14.75278 -14.40865 -14.08320 -13.74595 -13.25466 -12.99673 -12.26891 -11.79525 -11.22076 -11.01275 -10.96289 -10.24276 -9.97330 -9.95316 -9.75450 -9.52407 -8.61298 -8.11481 -8.00719 -6.77067 -3.89664 3.26939 3.33444 3.52656 3.61158 4.20873 4.34249 4.73477 4.75925 5.19787 5.35476 5.45990 5.54867 5.69253 5.91642 6.06128 6.16746 6.34260 6.41361 6.75535 7.39783 7.65700 7.79961 8.07441 8.59602 8.78588 9.47616 9.88410 10.66585 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075666 B = 0.009594 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.959968 B = 2917.799325 C = 3199.962337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.009 4.009 3 Si 1.097 2.903 4 H -0.284 1.284 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.383 4.383 8 H 0.100 0.900 9 N -0.569 5.569 10 C 0.470 3.530 11 O -0.587 6.587 12 C -0.174 4.174 13 H 0.108 0.892 14 C -0.154 4.154 15 C -0.118 4.118 16 H 0.102 0.898 17 C 0.102 3.898 18 N -0.858 5.858 19 H 0.262 0.738 20 H 0.377 0.623 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.337 0.663 26 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -8.571 0.480 8.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.212 4.212 3 Si 0.923 3.077 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.513 4.513 8 H 0.118 0.882 9 N -0.205 5.205 10 C 0.257 3.743 11 O -0.473 6.473 12 C -0.196 4.196 13 H 0.126 0.874 14 C -0.192 4.192 15 C -0.137 4.137 16 H 0.121 0.879 17 C -0.028 4.028 18 N -0.387 5.387 19 H 0.074 0.926 20 H 0.210 0.790 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.149 0.851 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.874 -7.000 -0.219 7.249 hybrid contribution -0.232 -1.323 0.930 1.634 sum 1.642 -8.323 0.711 8.513 Atomic orbital electron populations 1.70829 1.06556 1.29559 1.47025 1.26530 0.96548 1.02683 0.95428 0.83046 0.74298 0.73148 0.77236 1.20927 1.20993 1.20965 1.20635 0.94723 0.83883 1.52018 0.88224 1.41932 1.08282 1.05469 1.64770 1.18948 0.87586 0.83655 0.84147 1.90487 1.13661 1.86838 1.56276 1.22303 1.01459 0.92142 1.03741 0.87361 1.22982 1.02448 1.02071 0.91671 1.22149 0.94506 0.95900 1.01118 0.87950 1.21401 0.90946 0.87600 1.02833 1.58879 1.11502 1.21517 1.46808 0.92605 0.79030 0.88762 0.88570 0.90294 0.93265 0.85092 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 13.68 55.50 0.76 -24.75 15 2 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 15 3 Si 1.10 24.50 29.92 -169.99 -5.09 19.42 15 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.38 -10.90 9.68 -14.93 -0.14 -11.04 15 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 15 9 N -0.57 -14.66 5.28 -10.96 -0.06 -14.72 15 10 C 0.47 11.34 7.55 -10.98 -0.08 11.26 15 11 O -0.59 -15.75 12.68 5.55 0.07 -15.68 15 12 C -0.17 -3.23 6.19 -91.77 -0.57 -3.80 15 13 H 0.11 1.78 8.14 -51.93 -0.42 1.35 15 14 C -0.15 -2.50 9.88 -26.69 -0.26 -2.77 15 15 C -0.12 -1.94 5.95 -90.58 -0.54 -2.48 15 16 H 0.10 1.45 8.13 -51.93 -0.42 1.03 15 17 C 0.10 1.79 5.33 -3.82 -0.02 1.77 15 18 N -0.86 -11.99 9.62 -10.37 -0.10 -12.09 15 19 H 0.26 7.18 6.77 -40.82 -0.28 6.90 15 20 H 0.38 9.06 6.73 -40.82 -0.27 8.78 15 21 H 0.09 1.27 8.14 -51.93 -0.42 0.84 15 22 H 0.10 1.68 8.03 -51.93 -0.42 1.27 15 23 H 0.08 1.57 7.30 -51.93 -0.38 1.19 15 24 H 0.05 0.98 6.92 -51.93 -0.36 0.63 15 25 H 0.34 4.19 9.08 -39.29 -0.36 3.83 15 26 H 0.33 3.97 8.98 -39.29 -0.35 3.62 15 LS Contribution 227.98 15.07 3.44 3.44 Total: -1.00 -31.46 227.98 -5.55 -37.01 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -2.85 Total: 14.80 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.71 Total: -7.41 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.60 Total: -51.56 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.42 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.46 -5.55 -37.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715099136.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.326 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds