Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00103 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00096 * 3 2 1 7 7 C 1.38946 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99952 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00443 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99823 * 180.02562 * 10 9 7 13 13 H 1.09006 * 115.54990 * 325.58481 * 12 10 9 14 14 C 1.53002 * 117.49818 * 111.25204 * 12 10 9 15 15 C 1.52997 * 117.50130 * 179.91623 * 12 10 9 16 16 H 1.09000 * 117.50337 * 144.99889 * 15 12 10 17 17 C 1.53001 * 117.49629 * 359.97438 * 15 12 10 18 18 N 1.46902 * 109.47229 * 175.00140 * 17 15 12 19 19 H 0.96993 * 120.00098 * 179.97438 * 1 2 3 20 20 H 0.96996 * 119.99546 * 0.02562 * 9 7 2 21 21 H 1.08999 * 117.49898 * 214.97566 * 14 12 10 22 22 H 1.08990 * 117.49866 * 0.02562 * 14 12 10 23 23 H 1.08998 * 109.47552 * 295.00482 * 17 15 12 24 24 H 1.09004 * 109.47212 * 55.00409 * 17 15 12 25 25 H 1.00902 * 111.00272 * 180.02562 * 18 17 15 26 26 H 1.00898 * 110.99899 * 303.95590 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 1.2125 6 1 1.8894 2.3965 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 1 0.3062 -4.8648 0.5540 14 6 1.3160 -5.7199 -1.2676 15 6 2.0657 -6.1533 -0.0053 16 1 1.6692 -7.0041 0.5487 17 6 3.5899 -6.0199 -0.0083 18 7 4.1983 -7.3518 0.1096 19 1 -0.4850 -0.8400 -0.0004 20 1 0.3534 -2.3906 -0.0005 21 1 0.4264 -6.2858 -1.5437 22 1 1.9089 -5.3399 -2.0995 23 1 3.9122 -5.5544 -0.9397 24 1 3.9022 -5.4021 0.8337 25 1 5.2054 -7.2906 0.1104 26 1 3.8648 -7.8301 0.9331 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715099136.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -43.230382 kcal Electronic energy + Delta-G solvation = -11040.491115 eV Core-core repulsion = 8925.545723 eV Total energy + Delta-G solvation = -2114.945392 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.82803 -38.00763 -36.19073 -34.41396 -33.06664 -27.48449 -26.13142 -24.53607 -22.04570 -20.92499 -19.91977 -18.10447 -17.10635 -16.50726 -16.08221 -15.62363 -15.49977 -14.96335 -14.65032 -13.71481 -13.40318 -13.29468 -12.84233 -12.29466 -11.98068 -11.90730 -11.60286 -11.26895 -11.17108 -10.38386 -10.13293 -9.50680 -8.96325 -6.09810 1.47889 1.52083 1.79978 1.88054 2.39131 2.76983 3.00142 3.20227 3.46932 3.94670 3.98575 4.16179 4.29971 4.43257 4.67537 4.82146 4.87917 5.02555 5.37344 5.61052 5.92823 6.18431 6.54016 6.61550 6.71302 7.41917 7.90127 8.51504 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075666 B = 0.009594 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.959968 B = 2917.799325 C = 3199.962337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.042 4.042 3 Si 1.139 2.861 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.073 0.927 9 N -0.582 5.582 10 C 0.466 3.534 11 O -0.620 6.620 12 C -0.191 4.191 13 H 0.136 0.864 14 C -0.137 4.137 15 C -0.109 4.109 16 H 0.139 0.861 17 C 0.110 3.890 18 N -0.848 5.848 19 H 0.260 0.740 20 H 0.384 0.616 21 H 0.135 0.865 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.017 0.983 25 H 0.347 0.653 26 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 -9.727 0.528 9.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.240 4.240 3 Si 0.959 3.041 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.091 0.909 9 N -0.220 5.220 10 C 0.255 3.745 11 O -0.507 6.507 12 C -0.213 4.213 13 H 0.154 0.846 14 C -0.174 4.174 15 C -0.128 4.128 16 H 0.157 0.843 17 C -0.021 4.021 18 N -0.379 5.379 19 H 0.071 0.929 20 H 0.218 0.782 21 H 0.153 0.847 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.159 0.841 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.163 -8.196 -0.165 8.280 hybrid contribution 0.043 -1.082 0.909 1.414 sum 1.206 -9.278 0.744 9.386 Atomic orbital electron populations 1.70904 1.07023 1.29577 1.48053 1.27870 0.96680 1.05389 0.94065 0.82545 0.73424 0.69946 0.78192 1.20509 1.19570 1.19587 1.20605 0.93890 0.85684 1.53899 0.90892 1.42000 1.08611 1.05458 1.65896 1.20028 0.87618 0.85145 0.81695 1.90474 1.15542 1.87743 1.56950 1.22247 1.02532 0.89666 1.06844 0.84581 1.23106 1.03459 1.00556 0.90291 1.22324 0.93376 0.95464 1.01587 0.84336 1.21096 0.92377 0.88705 0.99894 1.58804 1.12237 1.19133 1.47719 0.92939 0.78200 0.84671 0.90447 0.93411 0.96445 0.84072 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.86 13.68 21.66 0.30 -51.56 15 2 C -0.04 -2.30 5.50 84.93 0.47 -1.84 15 3 Si 1.14 49.15 29.92 68.60 2.05 51.21 15 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.41 -23.99 9.68 84.04 0.81 -23.18 15 8 H 0.07 4.56 7.16 -2.91 -0.02 4.54 15 9 N -0.58 -30.55 5.28 -306.98 -1.62 -32.17 15 10 C 0.47 22.77 7.55 87.66 0.66 23.43 15 11 O -0.62 -34.33 12.68 -3.05 -0.04 -34.37 15 12 C -0.19 -6.74 6.19 -11.54 -0.07 -6.81 15 13 H 0.14 4.06 8.14 -2.38 -0.02 4.04 15 14 C -0.14 -4.06 9.88 30.62 0.30 -3.76 15 15 C -0.11 -3.29 5.95 -10.77 -0.06 -3.36 15 16 H 0.14 3.26 8.13 -2.39 -0.02 3.24 15 17 C 0.11 3.79 5.33 86.30 0.46 4.25 15 18 N -0.85 -22.01 9.62 -186.71 -1.80 -23.81 15 19 H 0.26 14.28 6.77 -92.71 -0.63 13.65 15 20 H 0.38 18.65 6.73 -92.71 -0.62 18.03 15 21 H 0.14 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.08 2.61 8.03 -2.39 -0.02 2.60 15 23 H 0.05 1.93 7.30 -2.39 -0.02 1.92 15 24 H 0.02 0.71 6.92 -2.38 -0.02 0.69 15 25 H 0.35 8.09 9.08 -89.69 -0.81 7.28 15 26 H 0.35 7.33 8.98 -89.70 -0.81 6.52 15 Total: -1.00 -68.84 227.98 0.58 -68.27 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.88 Total: 33.69 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 2.57 Total: -11.26 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.12 Total: -107.54 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.04 Total: -34.37 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.21 kcal Total: -68.84 0.58 -68.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715099136.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.036 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds