Wall clock time and date at job start Mon Mar 30 2020 02:00:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31414 * 1
3 3 Si 1.86805 * 119.99755 * 2 1
4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1
5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1
6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1
7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3
8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1
9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1
10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2
11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7
12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7
13 13 H 1.08998 * 115.55180 * 325.66643 * 12 10 9
14 14 C 1.52996 * 117.49613 * 111.37674 * 12 10 9
15 15 C 1.52998 * 117.49474 * 179.97438 * 12 10 9
16 16 H 1.08996 * 117.50338 * 0.02562 * 15 12 10
17 17 C 1.53002 * 117.49739 * 145.00170 * 15 12 10
18 18 N 1.46902 * 109.46833 * 185.00060 * 17 15 12
19 19 H 0.97005 * 120.00032 * 359.72583 * 1 2 3
20 20 H 0.97000 * 119.99715 * 359.97438 * 9 7 2
21 21 H 1.09004 * 117.49857 * 214.97597 * 14 12 10
22 22 H 1.08995 * 117.50401 * 359.97438 * 14 12 10
23 23 H 1.09007 * 109.46743 * 304.99190 * 17 15 12
24 24 H 1.08991 * 109.47664 * 64.99783 * 17 15 12
25 25 H 1.00901 * 111.00360 * 56.04452 * 18 17 15
26 26 H 1.00903 * 110.99664 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 1.2831 2.7465 -0.0006
5 1 3.1018 1.6965 1.2126
6 1 3.1019 1.6965 -1.2125
7 6 2.0090 -1.2033 -0.0057
8 1 3.0889 -1.2032 -0.0061
9 7 1.3234 -2.3906 -0.0118
10 6 1.9973 -3.5578 -0.0178
11 8 3.2103 -3.5577 -0.0183
12 6 1.2438 -4.8629 -0.0240
13 1 0.3057 -4.8667 0.5310
14 6 1.3185 -5.7157 -1.2920
15 6 2.0660 -6.1531 -0.0312
16 1 3.1518 -6.0581 -0.0312
17 6 1.5086 -7.3503 0.7414
18 7 2.4861 -8.4466 0.7176
19 1 -0.4850 0.8401 0.0040
20 1 0.3534 -2.3906 -0.0118
21 1 0.4293 -6.2808 -1.5716
22 1 1.9123 -5.3327 -2.1219
23 1 1.3152 -7.0583 1.7737
24 1 0.5797 -7.6817 0.2775
25 1 3.3767 -8.1450 1.0838
26 1 2.1413 -9.2495 1.2221
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000715111432.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:00:16
Heat of formation + Delta-G solvation = -47.820240 kcal
Electronic energy + Delta-G solvation = -10801.644395 eV
Core-core repulsion = 8686.499972 eV
Total energy + Delta-G solvation = -2115.144423 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 184.095 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-40.57280 -38.01058 -35.96953 -34.28892 -33.26153 -27.78974 -26.19330 -24.36617
-21.70016 -20.76464 -19.83688 -18.02537 -16.88927 -16.62188 -15.85340 -15.61503
-15.34655 -15.23717 -14.37822 -13.94386 -13.54810 -12.97293 -12.96595 -12.48659
-12.21777 -12.14502 -11.60150 -11.31285 -11.11858 -10.42139 -10.07515 -9.55555
-8.50894 -6.00766 1.36318 1.39549 1.51192 1.87284 2.26905 2.81699
3.07002 3.26396 3.69211 3.88913 4.08861 4.18862 4.40804 4.50504
4.66848 4.76189 4.86893 5.10009 5.36294 5.37721 5.95041 6.21968
6.53805 6.63830 7.06225 7.50583 8.05842 8.66307
Molecular weight = 184.10amu
Principal moments of inertia in cm(-1)
A = 0.097125 B = 0.008201 C = 0.007891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 288.220128 B = 3413.570846 C = 3547.643763
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.011 4.011
3 Si 0.996 3.004
4 H -0.267 1.267
5 H -0.271 1.271
6 H -0.271 1.271
7 C -0.342 4.342
8 H 0.078 0.922
9 N -0.564 5.564
10 C 0.460 3.540
11 O -0.641 6.641
12 C -0.183 4.183
13 H 0.136 0.864
14 C -0.135 4.135
15 C -0.115 4.115
16 H 0.087 0.913
17 C 0.100 3.900
18 N -0.854 5.854
19 H 0.280 0.720
20 H 0.398 0.602
21 H 0.134 0.866
22 H 0.077 0.923
23 H 0.036 0.964
24 H 0.092 0.908
25 H 0.344 0.656
26 H 0.355 0.645
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.981 -10.212 1.246 10.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.211 4.211
3 Si 0.819 3.181
4 H -0.191 1.191
5 H -0.196 1.196
6 H -0.196 1.196
7 C -0.471 4.471
8 H 0.096 0.904
9 N -0.199 5.199
10 C 0.249 3.751
11 O -0.530 6.530
12 C -0.205 4.205
13 H 0.154 0.846
14 C -0.172 4.172
15 C -0.134 4.134
16 H 0.105 0.895
17 C -0.030 4.030
18 N -0.386 5.386
19 H 0.089 0.911
20 H 0.232 0.768
21 H 0.152 0.848
22 H 0.096 0.904
23 H 0.054 0.946
24 H 0.110 0.890
25 H 0.156 0.844
26 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -1.460 -10.021 0.460 10.137
hybrid contribution 0.020 1.202 1.038 1.588
sum -1.440 -8.819 1.498 9.061
Atomic orbital electron populations
1.69672 1.06902 1.29600 1.49629 1.26105 0.96597 1.02533 0.95866
0.84954 0.77793 0.76330 0.79034 1.19140 1.19570 1.19644 1.19688
0.92760 0.84095 1.50602 0.90365 1.41892 1.09381 1.04597 1.64046
1.20055 0.87435 0.85579 0.82064 1.90459 1.16113 1.88173 1.58235
1.22158 1.02287 0.89427 1.06579 0.84648 1.23096 1.03186 1.00564
0.90395 1.22217 0.98034 0.92614 1.00573 0.89482 1.21302 0.95595
0.88699 0.97434 1.58653 1.06534 1.08797 1.64597 0.91068 0.76831
0.84815 0.90399 0.94598 0.88992 0.84393 0.83129
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.27 13.05 21.66 0.28 -49.99 15
2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 15
3 Si 1.00 43.39 29.55 68.60 2.03 45.42 15
4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15
5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15
6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15
7 C -0.34 -20.07 9.68 84.04 0.81 -19.26 15
8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 15
9 N -0.56 -30.42 5.29 -306.99 -1.62 -32.04 15
10 C 0.46 23.36 7.57 87.66 0.66 24.02 15
11 O -0.64 -37.63 15.83 -3.07 -0.05 -37.68 15
12 C -0.18 -6.71 5.91 -11.54 -0.07 -6.78 15
13 H 0.14 4.23 8.14 -2.39 -0.02 4.21 15
14 C -0.13 -4.17 9.88 30.58 0.30 -3.87 15
15 C -0.12 -3.67 5.46 -10.81 -0.06 -3.73 15
16 H 0.09 3.30 7.65 -2.39 -0.02 3.28 15
17 C 0.10 2.33 7.07 86.30 0.61 2.94 15
18 N -0.85 -17.70 9.62 -186.71 -1.80 -19.49 15
19 H 0.28 14.27 8.31 -92.70 -0.77 13.50 15
20 H 0.40 20.32 7.90 -92.71 -0.73 19.58 15
21 H 0.13 3.10 8.03 -2.38 -0.02 3.08 15
22 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15
23 H 0.04 0.81 8.14 -2.38 -0.02 0.79 15
24 H 0.09 1.81 7.88 -2.39 -0.02 1.79 15
25 H 0.34 7.10 8.98 -89.69 -0.81 6.30 15
26 H 0.35 5.36 9.08 -89.69 -0.81 4.55 15
Total: -1.00 -68.44 235.15 0.43 -68.00
By element:
Atomic # 1 Polarization: 33.71 SS G_CDS: -1.14 Total: 32.57 kcal
Atomic # 6 Polarization: -9.52 SS G_CDS: 2.73 Total: -6.79 kcal
Atomic # 7 Polarization: -98.39 SS G_CDS: -3.14 Total: -101.52 kcal
Atomic # 8 Polarization: -37.63 SS G_CDS: -0.05 Total: -37.68 kcal
Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal
Total: -68.44 0.43 -68.00 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000715111432.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.183 kcal
(2) G-P(sol) polarization free energy of solvation -68.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds