Wall clock time and date at job start Mon Mar 30 2020 01:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.56369 * 2 1 4 4 C 1.54481 * 110.51339 * 122.68180 * 2 1 3 5 5 O 1.44433 * 104.89874 * 142.67945 * 4 2 1 6 6 C 1.44419 * 105.27286 * 319.42898 * 5 4 2 7 7 H 1.08997 * 110.37754 * 281.57267 * 6 5 4 8 8 C 1.50711 * 110.36948 * 159.34453 * 6 5 4 9 9 O 1.21435 * 119.99726 * 346.45801 * 8 6 5 10 10 C 1.41022 * 119.99830 * 166.45604 * 8 6 5 11 11 H 1.08000 * 120.00402 * 353.71752 * 10 8 6 12 12 C 1.40456 * 119.99922 * 173.72001 * 10 8 6 13 13 N 1.30524 * 119.99801 * 6.24562 * 12 10 8 14 14 Si 1.86803 * 120.00336 * 186.24954 * 12 10 8 15 15 H 1.48490 * 109.47147 * 94.98164 * 14 12 10 16 16 H 1.48498 * 109.46978 * 214.98685 * 14 12 10 17 17 H 1.48500 * 109.46885 * 334.98183 * 14 12 10 18 18 C 1.54484 * 104.80649 * 40.51863 * 6 5 4 19 19 H 1.09001 * 109.46935 * 298.77155 * 1 2 3 20 20 H 1.08997 * 109.47545 * 58.77225 * 1 2 3 21 21 H 1.09002 * 109.47059 * 178.77393 * 1 2 3 22 22 H 1.08992 * 110.37182 * 23.79249 * 4 2 1 23 23 H 1.09001 * 110.37116 * 261.56360 * 4 2 1 24 24 H 0.97009 * 119.99933 * 180.02562 * 13 12 10 25 25 H 1.09001 * 110.51460 * 94.65765 * 18 6 5 26 26 H 1.08998 * 110.51160 * 217.23642 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7813 1.2178 5 8 3.2410 -1.4713 0.7262 6 6 2.8789 -1.9442 -0.5894 7 1 2.2616 -2.8394 -0.5144 8 6 4.1150 -2.2272 -1.4038 9 8 5.1963 -1.8235 -1.0263 10 6 4.0160 -2.9609 -2.6041 11 1 3.0742 -3.4064 -2.8885 12 6 5.1422 -3.1122 -3.4297 13 7 6.3071 -2.6801 -3.0299 14 14 4.9727 -3.9316 -5.0998 15 1 4.7866 -2.8927 -6.1443 16 1 6.1997 -4.7148 -5.3936 17 1 3.7972 -4.8389 -5.0890 18 6 2.0746 -0.7847 -1.2182 19 1 -0.3633 0.4946 0.9008 20 1 -0.3634 0.5328 -0.8787 21 1 -0.3633 -1.0275 -0.0220 22 1 1.3286 -1.4970 1.5701 23 1 2.3446 -0.0940 2.0185 24 1 7.0849 -2.7842 -3.6003 25 1 2.7255 -0.1508 -1.8203 26 1 1.2548 -1.1724 -1.8229 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718412734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:38 Heat of formation + Delta-G solvation = -99.984692 kcal Electronic energy + Delta-G solvation = -11300.332743 eV Core-core repulsion = 9150.633548 eV Total energy + Delta-G solvation = -2149.699195 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.93211 -36.10420 -33.00069 -32.53863 -29.55554 -26.60023 -25.78051 -22.82882 -19.92768 -19.40393 -16.58727 -15.59342 -15.07490 -14.71859 -14.47390 -13.44867 -13.18231 -12.71191 -12.49072 -12.14739 -11.65893 -11.34553 -11.11020 -10.81103 -10.60602 -10.43657 -10.30632 -10.08245 -9.97106 -9.02638 -8.87869 -7.29953 -6.22256 -4.89199 3.05502 3.14263 3.18232 4.02490 4.19464 4.72514 5.06678 5.14750 5.42446 5.44428 5.75054 5.76219 5.92457 5.98856 6.06768 6.16719 6.32818 6.44150 6.58838 6.70976 6.89888 7.26683 7.62061 8.07546 8.83755 8.88549 10.37098 10.59801 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.065899 B = 0.011440 C = 0.010253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.789425 B = 2446.872803 C = 2730.262275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 H 0.077 0.923 4 C 0.044 3.956 5 O -0.354 6.354 6 C 0.034 3.966 7 H 0.062 0.938 8 C 0.371 3.629 9 O -0.525 6.525 10 C -0.534 4.534 11 H 0.070 0.930 12 C 0.083 3.917 13 N -0.740 5.740 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.126 4.126 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.273 0.727 25 H 0.073 0.927 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 2.299 1.041 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 H 0.095 0.905 4 C -0.034 4.034 5 O -0.273 6.273 6 C -0.025 4.025 7 H 0.080 0.920 8 C 0.263 3.737 9 O -0.412 6.412 10 C -0.566 4.566 11 H 0.089 0.911 12 C -0.140 4.140 13 N -0.369 5.369 14 Si 0.731 3.269 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.164 4.164 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.639 2.507 1.354 9.097 hybrid contribution -0.542 -0.375 -0.938 1.146 sum -9.180 2.132 0.417 9.434 Atomic orbital electron populations 1.21780 0.94753 1.01764 1.01331 1.22616 0.95707 1.00362 0.96244 0.90485 1.23406 0.89070 0.94772 0.96143 1.89269 1.33428 1.73277 1.31299 1.23799 1.00216 0.95216 0.83285 0.91985 1.19382 0.86582 0.81994 0.85697 1.90420 1.28770 1.51432 1.70585 1.20642 0.96987 1.32732 1.06255 0.91124 1.25990 0.94529 0.93984 0.99524 1.69974 0.99494 1.32304 1.35117 0.86350 0.78867 0.79761 0.81877 1.19501 1.20167 1.18535 1.22834 0.99277 0.97233 0.97047 0.92912 0.92581 0.92548 0.93248 0.90226 0.91549 0.90782 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.96 37.15 0.33 -1.41 15 2 C -0.13 -2.12 3.73 -88.90 -0.33 -2.46 15 3 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 4 C 0.04 0.77 7.18 37.93 0.27 1.04 15 5 O -0.35 -8.58 10.95 -54.01 -0.59 -9.17 15 6 C 0.03 0.80 3.58 -27.10 -0.10 0.70 15 7 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 8 C 0.37 10.91 6.11 -33.25 -0.20 10.70 15 9 O -0.53 -17.73 15.16 -13.35 -0.20 -17.94 15 10 C -0.53 -15.07 9.22 -37.69 -0.35 -15.42 15 11 H 0.07 1.81 7.86 -52.49 -0.41 1.40 15 12 C 0.08 2.28 5.50 -17.27 -0.09 2.18 15 13 N -0.74 -21.91 11.75 55.57 0.65 -21.25 15 14 Si 0.91 19.57 29.57 -169.99 -5.03 14.55 15 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 17 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 18 C -0.13 -2.49 6.27 -25.00 -0.16 -2.64 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.05 0.77 7.87 -51.93 -0.41 0.37 15 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 25 H 0.07 1.59 7.86 -51.93 -0.41 1.18 15 26 H 0.07 1.25 7.75 -51.93 -0.40 0.85 15 LS Contribution 227.76 15.07 3.43 3.43 Total: -1.00 -33.85 227.76 -5.66 -39.51 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.30 Total: -1.83 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.63 Total: -7.29 kcal Atomic # 7 Polarization: -21.91 SS G_CDS: 0.65 Total: -21.25 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.79 Total: -27.11 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -33.85 -5.66 -39.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718412734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.477 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds