Wall clock time and date at job start Mon Mar 30 2020 01:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.56369 * 2 1 4 4 C 1.54481 * 110.51339 * 122.68180 * 2 1 3 5 5 O 1.44433 * 104.89874 * 142.67945 * 4 2 1 6 6 C 1.44419 * 105.27286 * 319.42898 * 5 4 2 7 7 H 1.08997 * 110.37754 * 281.57267 * 6 5 4 8 8 C 1.50711 * 110.36948 * 159.34453 * 6 5 4 9 9 O 1.21435 * 119.99726 * 346.45801 * 8 6 5 10 10 C 1.41022 * 119.99830 * 166.45604 * 8 6 5 11 11 H 1.08000 * 120.00402 * 353.71752 * 10 8 6 12 12 C 1.40456 * 119.99922 * 173.72001 * 10 8 6 13 13 N 1.30524 * 119.99801 * 6.24562 * 12 10 8 14 14 Si 1.86803 * 120.00336 * 186.24954 * 12 10 8 15 15 H 1.48490 * 109.47147 * 94.98164 * 14 12 10 16 16 H 1.48498 * 109.46978 * 214.98685 * 14 12 10 17 17 H 1.48500 * 109.46885 * 334.98183 * 14 12 10 18 18 C 1.54484 * 104.80649 * 40.51863 * 6 5 4 19 19 H 1.09001 * 109.46935 * 298.77155 * 1 2 3 20 20 H 1.08997 * 109.47545 * 58.77225 * 1 2 3 21 21 H 1.09002 * 109.47059 * 178.77393 * 1 2 3 22 22 H 1.08992 * 110.37182 * 23.79249 * 4 2 1 23 23 H 1.09001 * 110.37116 * 261.56360 * 4 2 1 24 24 H 0.97009 * 119.99933 * 180.02562 * 13 12 10 25 25 H 1.09001 * 110.51460 * 94.65765 * 18 6 5 26 26 H 1.08998 * 110.51160 * 217.23642 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7813 1.2178 5 8 3.2410 -1.4713 0.7262 6 6 2.8789 -1.9442 -0.5894 7 1 2.2616 -2.8394 -0.5144 8 6 4.1150 -2.2272 -1.4038 9 8 5.1963 -1.8235 -1.0263 10 6 4.0160 -2.9609 -2.6041 11 1 3.0742 -3.4064 -2.8885 12 6 5.1422 -3.1122 -3.4297 13 7 6.3071 -2.6801 -3.0299 14 14 4.9727 -3.9316 -5.0998 15 1 4.7866 -2.8927 -6.1443 16 1 6.1997 -4.7148 -5.3936 17 1 3.7972 -4.8389 -5.0890 18 6 2.0746 -0.7847 -1.2182 19 1 -0.3633 0.4946 0.9008 20 1 -0.3634 0.5328 -0.8787 21 1 -0.3633 -1.0275 -0.0220 22 1 1.3286 -1.4970 1.5701 23 1 2.3446 -0.0940 2.0185 24 1 7.0849 -2.7842 -3.6003 25 1 2.7255 -0.1508 -1.8203 26 1 1.2548 -1.1724 -1.8229 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718412734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:38 Heat of formation + Delta-G solvation = -123.519293 kcal Electronic energy + Delta-G solvation = -11301.353280 eV Core-core repulsion = 9150.633548 eV Total energy + Delta-G solvation = -2150.719732 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.62488 -38.24232 -34.80976 -34.35071 -31.38056 -28.62255 -27.02192 -24.62490 -21.48689 -21.23490 -18.62078 -17.56431 -16.69806 -16.42094 -16.16245 -14.96704 -14.92649 -14.35551 -14.18222 -13.74344 -13.28558 -13.08906 -12.81451 -12.58256 -12.26267 -12.04341 -11.89347 -11.62404 -11.49598 -10.99915 -10.68564 -9.49997 -8.33031 -7.14683 1.35179 1.37909 1.56471 2.13317 2.20365 3.09262 3.39117 3.67130 3.87888 4.02879 4.32234 4.37541 4.55727 4.69794 4.70495 4.82272 4.96006 5.03313 5.17069 5.20634 5.23057 5.40203 5.92469 5.99342 6.67454 6.77142 8.24661 8.48336 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.065899 B = 0.011440 C = 0.010253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.789425 B = 2446.872803 C = 2730.262275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 H 0.078 0.922 4 C 0.035 3.965 5 O -0.399 6.399 6 C 0.034 3.966 7 H 0.078 0.922 8 C 0.340 3.660 9 O -0.590 6.590 10 C -0.557 4.557 11 H 0.093 0.907 12 C 0.023 3.977 13 N -0.793 5.793 14 Si 1.002 2.998 15 H -0.258 1.258 16 H -0.269 1.269 17 H -0.244 1.244 18 C -0.122 4.122 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.283 0.717 25 H 0.044 0.956 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 1.920 -0.023 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.140 4.140 3 H 0.097 0.903 4 C -0.042 4.042 5 O -0.319 6.319 6 C -0.024 4.024 7 H 0.096 0.904 8 C 0.238 3.762 9 O -0.482 6.482 10 C -0.588 4.588 11 H 0.111 0.889 12 C -0.196 4.196 13 N -0.422 5.422 14 Si 0.819 3.181 15 H -0.182 1.182 16 H -0.193 1.193 17 H -0.166 1.166 18 C -0.160 4.160 19 H 0.094 0.906 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.116 0.884 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.103 2.132 0.307 11.310 hybrid contribution 0.228 -0.243 -0.538 0.633 sum -10.875 1.888 -0.230 11.040 Atomic orbital electron populations 1.21745 0.91176 1.02741 1.03180 1.22601 0.98516 0.99468 0.93464 0.90336 1.23777 0.87802 0.95497 0.97097 1.89212 1.36959 1.74295 1.31450 1.23576 0.98023 0.97503 0.83311 0.90435 1.20286 0.87645 0.81443 0.86832 1.90365 1.31427 1.54069 1.72350 1.21210 0.98452 1.32673 1.06472 0.88854 1.27367 0.93502 0.94039 1.04671 1.70127 1.00981 1.33470 1.37603 0.84958 0.79618 0.78742 0.74757 1.18209 1.19318 1.16643 1.22815 0.99005 0.95805 0.98338 0.90590 0.91322 0.91965 0.90766 0.88444 0.90698 0.93700 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.96 71.98 0.64 -2.11 15 2 C -0.12 -3.70 3.73 -9.68 -0.04 -3.73 15 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 4 C 0.03 1.16 7.18 72.49 0.52 1.68 15 5 O -0.40 -19.63 10.95 -131.03 -1.43 -21.06 15 6 C 0.03 1.65 3.58 30.36 0.11 1.76 15 7 H 0.08 3.41 8.14 -2.39 -0.02 3.39 15 8 C 0.34 20.73 6.11 26.37 0.16 20.89 15 9 O -0.59 -42.01 15.16 14.44 0.22 -41.79 15 10 C -0.56 -31.80 9.22 23.49 0.22 -31.58 15 11 H 0.09 4.71 7.86 -2.91 -0.02 4.69 15 12 C 0.02 1.27 5.50 85.43 0.47 1.74 15 13 N -0.79 -48.36 11.75 21.91 0.26 -48.10 15 14 Si 1.00 39.58 29.57 68.60 2.03 41.61 15 15 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 16 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 17 H -0.24 -8.85 7.11 99.48 0.71 -8.14 15 18 C -0.12 -4.71 6.27 31.71 0.20 -4.51 15 19 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.06 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.07 2.11 7.87 -2.39 -0.02 2.09 15 23 H 0.10 2.87 8.14 -2.39 -0.02 2.85 15 24 H 0.28 15.31 8.29 -92.70 -0.77 14.54 15 25 H 0.04 1.96 7.86 -2.39 -0.02 1.94 15 26 H 0.10 3.22 7.75 -2.39 -0.02 3.20 15 Total: -1.00 -77.48 227.76 4.51 -72.97 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.16 Total: 12.24 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 2.28 Total: -15.86 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.26 Total: -48.10 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -1.22 Total: -62.85 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -77.48 4.51 -72.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718412734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.550 kcal (2) G-P(sol) polarization free energy of solvation -77.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds