Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47474 * 300.00145 * 3 2 1 6 6 H 1.48505 * 109.47221 * 60.00332 * 3 2 1 7 7 C 1.37870 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00137 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46880 * 300.00366 * 9 7 2 11 11 O 1.42897 * 109.46527 * 60.00475 * 9 7 2 12 12 C 1.53000 * 109.46955 * 179.97438 * 9 7 2 13 13 C 1.53001 * 109.46886 * 174.99802 * 12 9 7 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.53000 * 117.50165 * 243.62462 * 15 14 13 17 17 C 1.52994 * 59.99907 * 252.50793 * 16 15 14 18 18 H 0.97002 * 119.99348 * 0.02562 * 1 2 3 19 19 H 0.96692 * 114.00732 * 60.00517 * 11 9 7 20 20 H 1.09001 * 109.46741 * 55.00197 * 12 9 7 21 21 H 1.09002 * 109.47398 * 295.00299 * 12 9 7 22 22 H 1.09001 * 109.46652 * 60.00345 * 13 12 9 23 23 H 1.08992 * 109.47514 * 300.00434 * 13 12 9 24 24 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 25 25 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 26 26 H 1.09003 * 115.54795 * 29.32827 * 15 14 13 27 27 H 1.09001 * 117.49810 * 359.97438 * 16 15 14 28 28 H 1.08995 * 117.50134 * 145.01745 * 16 15 14 29 29 H 1.09004 * 117.49933 * 252.50827 * 17 16 15 30 30 H 1.09002 * 117.49788 * 107.49222 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8897 11 8 0.4291 -2.5745 -1.1671 12 6 2.2452 -3.6621 -0.0018 13 6 1.4845 -4.9836 0.1239 14 6 2.4788 -6.1464 0.1233 15 6 1.7180 -7.4680 0.2484 16 6 1.9689 -8.3119 1.4997 17 6 2.5284 -8.7618 0.1487 18 1 -0.4849 0.8401 -0.0004 19 1 0.9209 -2.5291 -1.9984 20 1 2.9300 -3.5555 0.8396 21 1 2.8108 -3.6556 -0.9336 22 1 0.7997 -5.0900 -0.7174 23 1 0.9189 -4.9900 1.0557 24 1 3.0447 -6.1402 -0.8083 25 1 3.1632 -6.0398 0.9649 26 1 0.7106 -7.4717 -0.1678 27 1 2.6763 -7.9258 2.2337 28 1 1.1265 -8.8709 1.9070 29 1 2.0540 -9.6170 -0.3329 30 1 3.6036 -8.6717 -0.0060 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720134833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = -55.930661 kcal Electronic energy + Delta-G solvation = -10975.316270 eV Core-core repulsion = 8963.360495 eV Total energy + Delta-G solvation = -2011.955774 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.68901 -36.02844 -32.75007 -32.02589 -28.37873 -25.37522 -22.38112 -22.03224 -20.25991 -19.89709 -16.75062 -15.55674 -14.76529 -14.51504 -14.39529 -13.87276 -13.18619 -12.84172 -11.81312 -11.60465 -11.56579 -11.35464 -10.97606 -10.90391 -10.79542 -10.39479 -10.20268 -9.95658 -9.79212 -9.64485 -8.89660 -8.51841 -7.99913 -5.95181 -4.12830 3.29388 3.37413 3.41155 3.88007 4.42934 4.78047 5.02089 5.02452 5.31699 5.48910 5.63216 5.72754 5.75123 5.88234 6.10172 6.13305 6.23375 6.33610 6.39742 6.56540 6.65001 6.89017 6.98194 7.19005 7.81321 7.93438 8.27186 8.91164 9.46567 9.65358 11.09081 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.094107 B = 0.007113 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.463671 B = 3935.511806 C = 4059.697819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.570 4.570 8 H 0.055 0.945 9 C 0.225 3.775 10 H 0.054 0.946 11 O -0.567 6.567 12 C -0.141 4.141 13 C -0.111 4.111 14 C -0.089 4.089 15 C -0.146 4.146 16 C -0.184 4.184 17 C -0.188 4.188 18 H 0.259 0.741 19 H 0.343 0.657 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -11.759 0.289 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.608 4.608 8 H 0.073 0.927 9 C 0.168 3.832 10 H 0.071 0.929 11 O -0.370 6.370 12 C -0.179 4.179 13 C -0.149 4.149 14 C -0.127 4.127 15 C -0.164 4.164 16 C -0.221 4.221 17 C -0.225 4.225 18 H 0.069 0.931 19 H 0.187 0.813 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.555 -11.700 0.763 12.252 hybrid contribution 0.967 0.984 -0.301 1.412 sum 4.522 -10.715 0.462 11.640 Atomic orbital electron populations 1.70100 1.05940 1.26169 1.47619 1.25074 0.94693 0.99135 0.93987 0.86641 0.80238 0.83988 0.77652 1.19750 1.20909 1.20919 1.21789 0.93198 0.91780 1.54050 0.92678 1.19397 0.88032 0.89919 0.85842 0.92873 1.86537 1.38612 1.96391 1.15421 1.22332 0.99508 0.95562 1.00515 1.21542 0.97728 0.93801 1.01823 1.21262 0.97814 0.92281 1.01327 1.22453 1.00398 0.91983 1.01589 1.23006 1.03307 1.04450 0.91318 1.22945 0.99934 0.98614 1.00994 0.93144 0.81340 0.92864 0.93389 0.91871 0.92683 0.92087 0.92383 0.87895 0.88952 0.89233 0.89263 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.12 12.84 55.43 0.71 -25.41 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.57 -16.08 8.76 -34.44 -0.30 -16.39 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.23 5.86 2.83 -27.88 -0.08 5.78 16 10 H 0.05 1.52 8.14 -51.93 -0.42 1.10 16 11 O -0.57 -14.92 12.26 -35.23 -0.43 -15.35 16 12 C -0.14 -2.94 4.83 -26.73 -0.13 -3.07 16 13 C -0.11 -1.99 5.07 -26.73 -0.14 -2.12 16 14 C -0.09 -1.31 5.50 -26.73 -0.15 -1.46 16 15 C -0.15 -1.90 5.74 -90.62 -0.52 -2.42 16 16 C -0.18 -2.12 10.18 -26.73 -0.27 -2.39 16 17 C -0.19 -2.08 10.25 -26.74 -0.27 -2.35 16 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 19 H 0.34 8.00 9.04 45.56 0.41 8.42 16 20 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 26 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 256.53 15.07 3.87 3.87 Total: -1.00 -30.44 256.53 -6.99 -37.43 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.16 Total: 5.27 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.95 Total: -22.31 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.71 Total: -25.41 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.43 Total: -15.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.44 -6.99 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720134833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.503 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds