Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 120.00457 * 2 1 4 4 H 1.48503 * 109.46776 * 270.00138 * 3 2 1 5 5 H 1.48503 * 109.46819 * 29.99651 * 3 2 1 6 6 H 1.48492 * 109.47591 * 149.99955 * 3 2 1 7 7 C 1.37881 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99642 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.48190 * 111.07417 * 97.68544 * 10 9 7 12 12 C 1.53934 * 86.10057 * 137.52232 * 11 10 9 13 13 C 1.47962 * 111.00231 * 197.12327 * 10 9 7 14 14 H 1.08992 * 113.75931 * 108.09783 * 13 10 9 15 15 C 1.50691 * 113.75612 * 336.73292 * 13 10 9 16 16 N 1.34784 * 119.99834 * 157.73271 * 15 13 10 17 17 O 1.21287 * 120.00609 * 337.73399 * 15 13 10 18 18 H 0.97002 * 119.99865 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46934 * 60.00741 * 9 7 2 20 20 H 1.09005 * 109.47395 * 300.00234 * 9 7 2 21 21 H 1.09002 * 113.75248 * 23.24063 * 11 10 9 22 22 H 1.08996 * 113.82637 * 251.81468 * 11 10 9 23 23 H 1.09003 * 113.73529 * 221.95859 * 12 11 10 24 24 H 1.08997 * 113.73091 * 90.78446 * 12 11 10 25 25 H 0.96998 * 120.00134 * 0.02562 * 16 15 13 26 26 H 0.96998 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 2.4112 -4.1409 1.3698 12 6 2.3436 -5.5397 0.7307 13 6 1.5467 -4.8766 -0.4072 14 1 1.8320 -5.2203 -1.4014 15 6 0.0559 -4.8810 -0.1871 16 7 -0.7265 -5.7245 -0.8893 17 8 -0.4400 -4.1256 0.6218 18 1 -0.4850 0.8401 -0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6246 -2.5571 0.8897 21 1 1.5862 -3.9285 2.0499 22 1 3.3859 -3.8980 1.7928 23 1 1.7650 -6.2593 1.3100 24 1 3.3136 -5.9269 0.4192 25 1 -0.3299 -6.3290 -1.5361 26 1 -1.6860 -5.7277 -0.7474 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757159136.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = 3.471284 kcal Electronic energy + Delta-G solvation = -11430.825875 eV Core-core repulsion = 9317.905619 eV Total energy + Delta-G solvation = -2112.920256 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.31263 -37.00727 -33.36165 -32.70387 -29.43293 -26.36204 -25.29464 -21.56935 -21.48318 -18.96571 -16.78218 -16.54684 -15.96791 -14.93162 -14.75175 -14.07143 -13.75505 -13.35427 -12.57502 -12.13145 -11.49349 -11.03789 -10.91210 -10.52364 -10.35855 -10.09053 -9.82095 -9.44264 -9.30897 -9.01452 -8.27978 -7.48543 -5.85587 -3.87631 3.04278 3.40164 3.45053 3.49955 3.89226 4.52386 4.85218 4.98392 5.29173 5.46483 5.50705 5.92927 5.98734 6.12637 6.45681 6.59728 6.70129 7.10289 7.58482 7.67668 7.82858 8.01214 8.30025 8.55976 8.80171 9.21173 9.74006 11.24054 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.058414 B = 0.012369 C = 0.010889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.223099 B = 2263.270810 C = 2570.682928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.053 3.947 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.153 3.847 10 N -0.449 5.449 11 C 0.007 3.993 12 C -0.127 4.127 13 C -0.005 4.005 14 H 0.104 0.896 15 C 0.506 3.494 16 N -0.861 5.861 17 O -0.512 6.512 18 H 0.259 0.741 19 H 0.017 0.983 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.396 0.604 26 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -12.298 -1.158 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.027 3.973 10 N -0.172 5.172 11 C -0.122 4.122 12 C -0.165 4.165 13 C -0.118 4.118 14 H 0.122 0.878 15 C 0.289 3.711 16 N -0.426 5.426 17 O -0.385 6.385 18 H 0.068 0.932 19 H 0.036 0.964 20 H 0.063 0.937 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.223 0.777 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.746 -11.299 -0.947 11.472 hybrid contribution -0.662 0.495 -0.071 0.829 sum 1.084 -10.804 -1.018 10.906 Atomic orbital electron populations 1.70012 1.05974 1.26342 1.51132 1.25010 0.94842 0.99163 0.95803 0.86529 0.79740 0.83336 0.77958 1.20786 1.21373 1.19887 1.21208 0.93411 0.90191 1.49734 0.92175 1.20554 0.90487 0.87819 0.98443 1.68957 1.34838 1.00779 1.12673 1.23904 1.02176 0.92395 0.93733 1.23248 0.99818 0.97462 0.96006 1.23357 0.89265 0.98200 1.00985 0.87845 1.21161 0.89813 0.79483 0.80622 1.43971 1.11016 1.42335 1.45282 1.90836 1.75902 1.37169 1.34615 0.93179 0.96446 0.93668 0.90791 0.90231 0.91855 0.88915 0.77674 0.77486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.62 13.29 55.43 0.74 -27.88 15 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 22.87 29.54 -169.99 -5.02 17.85 15 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 15 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.51 -15.47 9.39 -34.44 -0.32 -15.79 15 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 15 9 C 0.15 4.35 3.36 -4.98 -0.02 4.33 15 10 N -0.45 -10.35 6.14 -233.31 -1.43 -11.78 15 11 C 0.01 0.14 7.65 -2.63 -0.02 0.12 15 12 C -0.13 -1.94 7.86 -25.80 -0.20 -2.14 15 13 C 0.00 -0.08 4.67 -67.80 -0.32 -0.40 15 14 H 0.10 1.57 8.14 -51.93 -0.42 1.15 15 15 C 0.51 9.54 6.58 -10.99 -0.07 9.47 15 16 N -0.86 -11.29 8.87 31.22 0.28 -11.02 15 17 O -0.51 -12.40 13.34 5.55 0.07 -12.33 15 18 H 0.26 7.77 8.31 -40.82 -0.34 7.43 15 19 H 0.02 0.54 7.38 -51.93 -0.38 0.16 15 20 H 0.05 1.42 5.24 -51.93 -0.27 1.14 15 21 H 0.07 1.62 6.82 -51.93 -0.35 1.26 15 22 H 0.08 1.47 8.14 -51.93 -0.42 1.04 15 23 H 0.06 0.86 8.09 -51.93 -0.42 0.44 15 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.40 3.66 8.83 -40.82 -0.36 3.30 15 26 H 0.40 4.75 8.93 -40.82 -0.36 4.39 15 LS Contribution 223.30 15.07 3.37 3.37 Total: -1.00 -36.09 223.30 -6.02 -42.11 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.97 Total: 2.59 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.05 Total: -2.90 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.42 Total: -50.68 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -36.09 -6.02 -42.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757159136.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.583 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds