Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.54272 * 2 1 4 4 C 1.50702 * 109.47159 * 59.99412 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72211 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.53185 * 109.54282 * 120.17391 * 2 1 3 13 13 C 1.53104 * 109.15591 * 63.06221 * 12 2 1 14 14 O 1.42905 * 109.48254 * 57.48105 * 13 12 2 15 15 C 1.42909 * 114.09772 * 298.88280 * 14 13 12 16 16 C 1.53098 * 109.41229 * 61.15922 * 15 14 13 17 17 H 1.09005 * 109.46850 * 60.00632 * 1 2 3 18 18 H 1.09005 * 109.46981 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47528 * 300.00280 * 1 2 3 20 20 H 1.09004 * 109.47066 * 299.99615 * 3 2 1 21 21 H 1.08994 * 109.47405 * 179.97438 * 3 2 1 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.52527 * 182.88318 * 12 2 1 24 24 H 1.09006 * 109.52120 * 303.07454 * 12 2 1 25 25 H 1.08997 * 109.41264 * 297.49790 * 13 12 2 26 26 H 1.09000 * 109.49103 * 177.50337 * 13 12 2 27 27 H 1.08998 * 109.47969 * 301.17894 * 15 14 13 28 28 H 1.08993 * 109.48765 * 181.15051 * 15 14 13 29 29 H 1.08996 * 109.51932 * 182.48739 * 16 15 14 30 30 H 1.08997 * 109.56817 * 62.33160 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 1.5402 2.1529 1.2304 5 1 0.9189 1.6288 1.9415 6 6 1.8797 3.4709 1.4515 7 7 2.6366 4.1090 0.5857 8 14 1.2643 4.3500 2.9804 9 1 1.7590 3.6445 4.1899 10 1 1.7650 5.7481 2.9828 11 1 -0.2207 4.3566 2.9839 12 6 2.0424 -0.7256 1.2480 13 6 1.5930 -2.1884 1.1987 14 8 2.0772 -2.7956 -0.0009 15 6 1.5914 -2.1879 -1.1996 16 6 2.0425 -0.7256 -1.2478 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 1.6791 1.9561 -0.8901 21 1 3.1317 1.4405 0.0005 22 1 2.8751 5.0364 0.7411 23 1 3.1311 -0.6810 1.2741 24 1 1.6359 -0.2481 2.1396 25 1 0.5041 -2.2336 1.2151 26 1 1.9921 -2.7207 2.0621 27 1 0.5025 -2.2330 -1.2146 28 1 1.9892 -2.7197 -2.0639 29 1 1.6361 -0.2483 -2.1394 30 1 3.1312 -0.6801 -1.2743 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885243561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -72.182154 kcal Electronic energy + Delta-G solvation = -11826.937970 eV Core-core repulsion = 9814.277478 eV Total energy + Delta-G solvation = -2012.660492 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.26247 -35.19655 -32.35938 -30.60024 -28.07251 -26.65210 -24.16846 -22.93289 -21.31538 -17.86168 -16.23246 -15.55667 -15.49070 -14.41911 -14.37589 -13.78758 -13.29999 -12.84714 -12.13035 -11.85369 -11.33837 -11.16027 -10.87290 -10.70210 -10.63369 -10.57362 -10.36329 -10.01568 -9.61126 -9.43669 -8.83618 -8.56093 -8.33052 -5.97657 -3.98660 3.32954 3.37964 3.39667 4.30920 4.46699 5.34727 5.37899 5.49314 5.57682 5.66599 5.73264 5.85456 5.98910 6.04759 6.27661 6.38003 6.49979 6.54091 6.69840 6.79456 7.07331 7.18199 7.21661 7.62701 7.68393 7.83517 8.02034 8.45508 9.06447 9.64287 11.13777 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.065967 B = 0.011419 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.355627 B = 2451.403515 C = 2609.801690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C 0.035 3.965 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.132 4.132 13 C 0.057 3.943 14 O -0.392 6.392 15 C 0.061 3.939 16 C -0.145 4.145 17 H 0.046 0.954 18 H 0.032 0.968 19 H 0.063 0.937 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.260 0.740 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -9.306 -0.941 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.002 4.002 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.170 4.170 13 C -0.020 4.020 14 O -0.311 6.311 15 C -0.015 4.015 16 C -0.183 4.183 17 H 0.065 0.935 18 H 0.051 0.949 19 H 0.082 0.918 20 H 0.033 0.967 21 H 0.033 0.967 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.701 -9.284 -0.975 9.718 hybrid contribution -0.445 0.958 0.808 1.330 sum -3.146 -8.327 -0.167 8.903 Atomic orbital electron populations 1.21861 0.95813 0.98837 1.02351 1.20625 0.94808 0.98187 0.92227 1.19122 0.96060 0.87966 0.97028 1.21211 1.30912 0.96026 1.06823 0.92466 1.25020 0.95333 0.97726 0.96438 1.69958 1.36990 1.10973 1.35688 0.86725 0.79123 0.78769 0.83775 1.20312 1.21392 1.20341 1.22128 1.01343 0.93562 0.99937 1.22705 0.97887 0.94644 0.86728 1.87825 1.72232 1.56923 1.14126 1.22580 0.97898 0.93961 0.87091 1.22274 1.01486 0.95037 0.99510 0.93531 0.94906 0.91760 0.96656 0.96676 0.93055 0.91916 0.90254 0.93606 0.89977 0.93526 0.90047 0.91640 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.68 37.16 0.29 -2.19 16 2 C -0.06 -1.18 0.53 -154.33 -0.08 -1.27 16 3 C 0.04 0.90 4.05 -27.88 -0.11 0.78 16 4 C -0.51 -13.99 7.70 -34.44 -0.27 -14.25 16 5 H 0.06 1.51 5.70 -52.49 -0.30 1.21 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C -0.13 -2.53 4.61 -26.58 -0.12 -2.65 16 13 C 0.06 0.92 6.57 37.21 0.24 1.17 16 14 O -0.39 -6.76 10.77 -35.23 -0.38 -7.14 16 15 C 0.06 0.96 6.57 37.21 0.24 1.20 16 16 C -0.15 -2.59 4.92 -26.59 -0.13 -2.72 16 17 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 18 H 0.03 0.53 5.02 -51.93 -0.26 0.27 16 19 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 20 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.08 1.58 6.75 -51.93 -0.35 1.23 16 25 H 0.05 0.70 6.61 -51.93 -0.34 0.36 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.68 6.60 -51.93 -0.34 0.34 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 233.74 15.07 3.52 3.52 Total: -1.00 -29.48 233.74 -5.63 -35.12 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.46 Total: -3.41 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.38 Total: -7.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.48 -5.63 -35.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885243561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.065 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds