Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.54272 * 2 1 4 4 C 1.50702 * 109.47159 * 59.99412 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72211 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.53185 * 109.54282 * 120.17391 * 2 1 3 13 13 C 1.53104 * 109.15591 * 63.06221 * 12 2 1 14 14 O 1.42905 * 109.48254 * 57.48105 * 13 12 2 15 15 C 1.42909 * 114.09772 * 298.88280 * 14 13 12 16 16 C 1.53098 * 109.41229 * 61.15922 * 15 14 13 17 17 H 1.09005 * 109.46850 * 60.00632 * 1 2 3 18 18 H 1.09005 * 109.46981 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47528 * 300.00280 * 1 2 3 20 20 H 1.09004 * 109.47066 * 299.99615 * 3 2 1 21 21 H 1.08994 * 109.47405 * 179.97438 * 3 2 1 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.52527 * 182.88318 * 12 2 1 24 24 H 1.09006 * 109.52120 * 303.07454 * 12 2 1 25 25 H 1.08997 * 109.41264 * 297.49790 * 13 12 2 26 26 H 1.09000 * 109.49103 * 177.50337 * 13 12 2 27 27 H 1.08998 * 109.47969 * 301.17894 * 15 14 13 28 28 H 1.08993 * 109.48765 * 181.15051 * 15 14 13 29 29 H 1.08996 * 109.51932 * 182.48739 * 16 15 14 30 30 H 1.08997 * 109.56817 * 62.33160 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 1.5402 2.1529 1.2304 5 1 0.9189 1.6288 1.9415 6 6 1.8797 3.4709 1.4515 7 7 2.6366 4.1090 0.5857 8 14 1.2643 4.3500 2.9804 9 1 1.7590 3.6445 4.1899 10 1 1.7650 5.7481 2.9828 11 1 -0.2207 4.3566 2.9839 12 6 2.0424 -0.7256 1.2480 13 6 1.5930 -2.1884 1.1987 14 8 2.0772 -2.7956 -0.0009 15 6 1.5914 -2.1879 -1.1996 16 6 2.0425 -0.7256 -1.2478 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 1.6791 1.9561 -0.8901 21 1 3.1317 1.4405 0.0005 22 1 2.8751 5.0364 0.7411 23 1 3.1311 -0.6810 1.2741 24 1 1.6359 -0.2481 2.1396 25 1 0.5041 -2.2336 1.2151 26 1 1.9921 -2.7207 2.0621 27 1 0.5025 -2.2330 -1.2146 28 1 1.9892 -2.7197 -2.0639 29 1 1.6361 -0.2483 -2.1394 30 1 3.1312 -0.6801 -1.2743 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885243561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -90.756403 kcal Electronic energy + Delta-G solvation = -11827.743410 eV Core-core repulsion = 9814.277478 eV Total energy + Delta-G solvation = -2013.465932 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.70593 -36.80720 -34.42614 -31.97105 -29.92436 -28.27464 -25.99429 -24.35653 -23.01304 -19.43208 -18.34786 -17.05415 -16.80059 -16.32618 -15.72530 -15.37524 -14.95137 -14.48590 -14.03700 -13.42044 -13.01884 -12.75119 -12.73847 -12.53610 -12.28571 -12.13724 -12.01559 -11.72616 -11.36690 -10.94625 -10.69783 -10.51695 -10.10433 -8.15932 -6.24234 1.39720 1.42059 1.49402 2.42096 3.06516 3.17488 3.95012 4.02492 4.13852 4.23349 4.41090 4.51280 4.58045 4.78092 4.86475 4.91878 5.00119 5.05705 5.16531 5.25672 5.42455 5.46751 5.53070 5.57411 5.83859 5.89196 6.30414 6.35616 6.90775 7.43531 8.96147 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.065967 B = 0.011419 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.355627 B = 2451.403515 C = 2609.801690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 C 0.041 3.959 4 C -0.519 4.519 5 H 0.067 0.933 6 C -0.005 4.005 7 N -0.938 5.938 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.130 4.130 13 C 0.063 3.937 14 O -0.402 6.402 15 C 0.065 3.935 16 C -0.144 4.144 17 H 0.043 0.957 18 H 0.066 0.934 19 H 0.048 0.952 20 H -0.014 1.014 21 H -0.021 1.021 22 H 0.260 0.740 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -10.816 -0.195 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C 0.004 3.996 4 C -0.557 4.557 5 H 0.086 0.914 6 C -0.202 4.202 7 N -0.580 5.580 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.168 4.168 13 C -0.013 4.013 14 O -0.321 6.321 15 C -0.012 4.012 16 C -0.182 4.182 17 H 0.062 0.938 18 H 0.084 0.916 19 H 0.068 0.932 20 H 0.004 0.996 21 H -0.003 1.003 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.074 -10.815 -0.226 11.559 hybrid contribution 0.019 1.440 0.530 1.534 sum -4.055 -9.375 0.304 10.219 Atomic orbital electron populations 1.21778 0.94198 1.00709 1.01472 1.20555 0.96074 0.95054 0.94319 1.19009 0.93737 0.91563 0.95293 1.21610 1.30407 0.96320 1.07332 0.91446 1.25961 0.95594 0.98854 0.99754 1.70112 1.38624 1.11299 1.37917 0.85605 0.78990 0.77274 0.79827 1.19231 1.21394 1.19113 1.22069 1.00023 0.95993 0.98708 1.22719 0.98946 0.92219 0.87410 1.87831 1.72716 1.56875 1.14670 1.22687 0.99027 0.91912 0.87524 1.22243 1.00537 0.97044 0.98371 0.93833 0.91551 0.93248 0.99614 1.00250 0.93119 0.93909 0.91348 0.91840 0.87793 0.91746 0.87416 0.91141 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 7.68 71.98 0.55 -3.91 16 2 C -0.06 -2.41 0.53 -52.06 -0.03 -2.44 16 3 C 0.04 2.16 4.05 29.85 0.12 2.28 16 4 C -0.52 -28.77 7.70 25.60 0.20 -28.58 16 5 H 0.07 3.53 5.70 -2.91 -0.02 3.52 16 6 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 7 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 8 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C -0.13 -4.88 4.61 30.69 0.14 -4.74 16 13 C 0.06 1.87 6.57 72.02 0.47 2.34 16 14 O -0.40 -12.56 10.77 -148.98 -1.60 -14.16 16 15 C 0.06 1.80 6.57 72.01 0.47 2.28 16 16 C -0.14 -5.01 4.92 30.68 0.15 -4.85 16 17 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 18 H 0.07 1.93 5.02 -2.38 -0.01 1.91 16 19 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 20 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 21 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 22 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 2.68 6.75 -2.38 -0.02 2.66 16 25 H 0.06 1.68 6.61 -2.39 -0.02 1.66 16 26 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.06 1.60 6.60 -2.39 -0.02 1.58 16 28 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -63.90 233.74 4.35 -59.54 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.10 Total: 3.28 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 2.54 Total: -37.43 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.28 Total: -57.56 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.60 Total: -14.16 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.90 4.35 -59.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885243561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.214 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds