Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99941 * 2 1 4 4 H 1.08002 * 119.99932 * 203.04595 * 3 2 1 5 5 C 1.38805 * 120.00060 * 23.04865 * 3 2 1 6 6 N 1.31618 * 120.00225 * 12.92875 * 5 3 2 7 7 Si 1.86807 * 119.99850 * 192.93394 * 5 3 2 8 8 H 1.48503 * 109.47022 * 59.99816 * 7 5 3 9 9 H 1.48503 * 109.47006 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46983 * 299.99909 * 7 5 3 11 11 C 1.46506 * 120.00136 * 180.02562 * 2 1 3 12 12 C 1.50694 * 109.47172 * 89.99541 * 11 2 1 13 13 N 1.27644 * 125.76924 * 359.97438 * 12 11 2 14 14 O 1.41381 * 113.17448 * 180.29936 * 13 12 11 15 15 C 1.44247 * 107.50378 * 342.63238 * 14 13 12 16 16 C 1.51678 * 125.76997 * 179.97438 * 12 11 2 17 17 H 1.09000 * 109.46664 * 275.12259 * 1 2 3 18 18 H 1.08999 * 109.47059 * 35.11515 * 1 2 3 19 19 H 1.08995 * 109.47032 * 155.12448 * 1 2 3 20 20 H 0.97005 * 119.99784 * 180.02562 * 6 5 3 21 21 H 1.09002 * 109.46649 * 329.99683 * 11 2 1 22 22 H 1.09001 * 109.47044 * 209.99674 * 11 2 1 23 23 H 1.09002 * 111.01357 * 143.17512 * 15 14 13 24 24 H 1.09001 * 111.01288 * 267.04058 * 15 14 13 25 25 H 1.08999 * 110.81127 * 77.05242 * 16 12 11 26 26 H 1.09004 * 110.80807 * 313.54355 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3662 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3159 4.0074 0.1454 8 1 2.4195 4.2280 -1.3195 9 1 1.4737 5.0720 0.7476 10 1 3.6720 4.0475 0.7491 11 6 2.1976 -1.2688 -0.0006 12 6 2.4486 -1.7032 -1.4215 13 7 2.0843 -1.0728 -2.4699 14 8 2.4537 -1.7256 -3.6683 15 6 3.4781 -2.6869 -3.3406 16 6 3.1770 -2.9635 -1.8477 17 1 -0.3633 0.0918 1.0236 18 1 -0.3633 0.8406 -0.5911 19 1 -0.3633 -0.9323 -0.4323 20 1 -0.0152 3.0663 1.4745 21 1 1.6084 -2.0286 0.5130 22 1 3.1500 -1.1386 0.5133 23 1 3.3681 -3.5935 -3.9358 24 1 4.4719 -2.2572 -3.4661 25 1 2.5354 -3.8377 -1.7375 26 1 4.1011 -3.0865 -1.2829 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641695625.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = 45.865517 kcal Electronic energy + Delta-G solvation = -11266.460791 eV Core-core repulsion = 9155.378887 eV Total energy + Delta-G solvation = -2111.081904 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.43110 -35.66091 -32.66961 -30.76545 -30.04724 -26.67626 -25.71595 -22.96803 -21.48486 -19.03140 -16.77730 -16.06082 -15.64713 -14.93357 -14.22619 -13.58778 -13.25820 -12.81241 -12.59650 -12.01066 -11.58614 -11.50533 -10.99940 -10.79554 -10.69970 -10.38458 -10.07974 -9.94811 -9.78024 -8.78499 -8.51973 -6.80165 -5.70517 -3.18045 2.59050 3.42600 3.48051 3.51388 3.74890 4.43941 4.68877 4.93880 5.06613 5.18687 5.49470 5.57757 5.66233 5.80074 5.89218 6.20464 6.36616 6.64157 6.80412 7.44290 7.74008 7.84634 8.20102 8.42081 9.23962 9.85381 10.32958 11.34565 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.055501 B = 0.011911 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.372717 B = 2350.187965 C = 2584.015431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.587 5.587 3 C -0.253 4.253 4 H 0.065 0.935 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.209 3.791 12 C 0.057 3.943 13 N -0.257 5.257 14 O -0.232 6.232 15 C 0.011 3.989 16 C -0.153 4.153 17 H 0.034 0.966 18 H 0.043 0.957 19 H -0.003 1.003 20 H 0.253 0.747 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -9.730 -2.870 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.307 5.307 3 C -0.382 4.382 4 H 0.083 0.917 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.078 3.922 12 C -0.141 4.141 13 N -0.002 5.002 14 O -0.246 6.246 15 C -0.068 4.068 16 C -0.193 4.193 17 H 0.052 0.948 18 H 0.062 0.938 19 H 0.015 0.985 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.117 -8.655 -3.422 10.177 hybrid contribution 0.960 0.078 -0.059 0.965 sum 5.078 -8.578 -3.481 10.558 Atomic orbital electron populations 1.20817 0.82050 0.95785 0.99344 1.43752 1.02100 1.00066 1.84768 1.19057 0.98199 0.85551 1.35398 0.91711 1.24981 0.97764 0.98518 0.98001 1.70060 1.19363 1.27394 1.38311 0.86315 0.78346 0.83650 0.78100 1.20981 1.21581 1.20924 1.19469 0.97863 0.89718 0.85145 1.28561 0.94391 0.91299 0.99881 1.78291 1.15105 1.14865 0.91915 1.91244 1.54667 1.52741 1.25972 1.23981 0.93770 0.94115 0.94899 1.23174 1.01867 0.98638 0.95627 0.94755 0.93820 0.98465 0.93656 0.91193 0.90196 0.88892 0.91384 0.88891 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.19 8.98 59.85 0.54 4.72 15 2 N -0.59 -14.98 2.62 -182.50 -0.48 -15.46 15 3 C -0.25 -7.09 9.65 -15.06 -0.15 -7.24 15 4 H 0.07 1.80 7.86 -52.49 -0.41 1.39 15 5 C 0.01 0.16 5.10 -17.43 -0.09 0.07 15 6 N -0.91 -26.77 10.71 55.49 0.59 -26.18 15 7 Si 0.91 22.51 29.57 -169.99 -5.03 17.49 15 8 H -0.28 -7.12 7.11 56.52 0.40 -6.72 15 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 15 11 C 0.21 4.14 6.25 -5.19 -0.03 4.11 15 12 C 0.06 1.08 7.28 -78.58 -0.57 0.51 15 13 N -0.26 -5.78 12.05 35.65 0.43 -5.35 15 14 O -0.23 -4.68 12.52 -11.36 -0.14 -4.83 15 15 C 0.01 0.15 8.24 38.10 0.31 0.47 15 16 C -0.15 -2.06 7.07 -26.46 -0.19 -2.25 15 17 H 0.03 0.91 7.34 -51.93 -0.38 0.53 15 18 H 0.04 1.22 7.34 -51.93 -0.38 0.84 15 19 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 15 20 H 0.25 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.07 1.21 8.07 -51.93 -0.42 0.79 15 22 H 0.08 1.48 8.04 -51.93 -0.42 1.06 15 23 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 228.93 15.07 3.45 3.45 Total: -1.00 -32.42 228.93 -4.60 -37.03 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -3.25 Total: -6.54 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.17 Total: 0.39 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.55 Total: -46.98 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.14 Total: -4.83 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.42 -4.60 -37.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641695625.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.893 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds