Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99941 * 2 1 4 4 H 1.08002 * 119.99932 * 203.04595 * 3 2 1 5 5 C 1.38805 * 120.00060 * 23.04865 * 3 2 1 6 6 N 1.31618 * 120.00225 * 12.92875 * 5 3 2 7 7 Si 1.86807 * 119.99850 * 192.93394 * 5 3 2 8 8 H 1.48503 * 109.47022 * 59.99816 * 7 5 3 9 9 H 1.48503 * 109.47006 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46983 * 299.99909 * 7 5 3 11 11 C 1.46506 * 120.00136 * 180.02562 * 2 1 3 12 12 C 1.50694 * 109.47172 * 89.99541 * 11 2 1 13 13 N 1.27644 * 125.76924 * 359.97438 * 12 11 2 14 14 O 1.41381 * 113.17448 * 180.29936 * 13 12 11 15 15 C 1.44247 * 107.50378 * 342.63238 * 14 13 12 16 16 C 1.51678 * 125.76997 * 179.97438 * 12 11 2 17 17 H 1.09000 * 109.46664 * 275.12259 * 1 2 3 18 18 H 1.08999 * 109.47059 * 35.11515 * 1 2 3 19 19 H 1.08995 * 109.47032 * 155.12448 * 1 2 3 20 20 H 0.97005 * 119.99784 * 180.02562 * 6 5 3 21 21 H 1.09002 * 109.46649 * 329.99683 * 11 2 1 22 22 H 1.09001 * 109.47044 * 209.99674 * 11 2 1 23 23 H 1.09002 * 111.01357 * 143.17512 * 15 14 13 24 24 H 1.09001 * 111.01288 * 267.04058 * 15 14 13 25 25 H 1.08999 * 110.81127 * 77.05242 * 16 12 11 26 26 H 1.09004 * 110.80807 * 313.54355 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3662 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3159 4.0074 0.1454 8 1 2.4195 4.2280 -1.3195 9 1 1.4737 5.0720 0.7476 10 1 3.6720 4.0475 0.7491 11 6 2.1976 -1.2688 -0.0006 12 6 2.4486 -1.7032 -1.4215 13 7 2.0843 -1.0728 -2.4699 14 8 2.4537 -1.7256 -3.6683 15 6 3.4781 -2.6869 -3.3406 16 6 3.1770 -2.9635 -1.8477 17 1 -0.3633 0.0918 1.0236 18 1 -0.3633 0.8406 -0.5911 19 1 -0.3633 -0.9323 -0.4323 20 1 -0.0152 3.0663 1.4745 21 1 1.6084 -2.0286 0.5130 22 1 3.1500 -1.1386 0.5133 23 1 3.3681 -3.5935 -3.9358 24 1 4.4719 -2.2572 -3.4661 25 1 2.5354 -3.8377 -1.7375 26 1 4.1011 -3.0865 -1.2829 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641695625.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = 23.373830 kcal Electronic energy + Delta-G solvation = -11267.436104 eV Core-core repulsion = 9155.378887 eV Total energy + Delta-G solvation = -2112.057217 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.80216 -37.53195 -34.35349 -32.63133 -31.30625 -28.43957 -27.79350 -24.28368 -23.28276 -20.55218 -18.76436 -17.40638 -16.99744 -16.81179 -15.83035 -15.47721 -14.96030 -14.41240 -13.95379 -13.54776 -13.31032 -12.88587 -12.76873 -12.67546 -12.49923 -12.19269 -11.98916 -11.92629 -11.31274 -10.65051 -10.17435 -8.85148 -7.83996 -5.32991 1.16896 1.43809 1.48618 1.54190 2.44212 2.49625 3.20590 3.38024 3.78326 3.86312 4.04914 4.11246 4.58330 4.67034 4.75904 4.82860 4.85376 4.86797 5.23059 5.34385 5.61421 5.69184 6.30248 6.84622 7.13529 7.83200 8.25814 9.19360 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.055501 B = 0.011911 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.372717 B = 2350.187965 C = 2584.015431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.607 5.607 3 C -0.256 4.256 4 H 0.062 0.938 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.964 3.036 8 H -0.290 1.290 9 H -0.290 1.290 10 H -0.269 1.269 11 C 0.203 3.797 12 C 0.061 3.939 13 N -0.322 5.322 14 O -0.257 6.257 15 C 0.002 3.998 16 C -0.139 4.139 17 H 0.017 0.983 18 H 0.006 0.994 19 H 0.022 0.978 20 H 0.249 0.751 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.127 0.873 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -11.368 -2.942 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.328 5.328 3 C -0.386 4.386 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.793 3.207 8 H -0.217 1.217 9 H -0.216 1.216 10 H -0.195 1.195 11 C 0.075 3.925 12 C -0.136 4.136 13 N -0.068 5.068 14 O -0.273 6.273 15 C -0.076 4.076 16 C -0.179 4.179 17 H 0.035 0.965 18 H 0.025 0.975 19 H 0.041 0.959 20 H 0.058 0.942 21 H 0.119 0.881 22 H 0.114 0.886 23 H 0.145 0.855 24 H 0.093 0.907 25 H 0.138 0.862 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.596 -10.337 -3.497 12.264 hybrid contribution 0.564 0.458 -0.083 0.731 sum 6.160 -9.879 -3.579 12.180 Atomic orbital electron populations 1.20495 0.82728 0.95399 0.97671 1.43930 1.02124 1.01484 1.85225 1.19291 0.98127 0.86987 1.34174 0.91990 1.25702 0.98582 1.01637 0.98552 1.70195 1.20642 1.27687 1.39656 0.85392 0.78119 0.79921 0.77306 1.21671 1.21630 1.19472 1.19804 0.98527 0.88038 0.86157 1.28501 0.93532 0.93090 0.98442 1.78274 1.17717 1.17339 0.93453 1.91179 1.56470 1.54178 1.25441 1.24377 0.92821 0.94281 0.96075 1.23192 1.03136 0.96556 0.95026 0.96496 0.97540 0.95923 0.94193 0.88084 0.88613 0.85502 0.90675 0.86215 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.34 8.98 127.77 1.15 10.49 15 2 N -0.61 -30.65 2.62 -731.31 -1.92 -32.56 15 3 C -0.26 -14.35 9.65 84.03 0.81 -13.54 15 4 H 0.06 3.44 7.86 -2.91 -0.02 3.42 15 5 C -0.05 -2.85 5.10 84.86 0.43 -2.42 15 6 N -0.94 -56.23 10.71 21.65 0.23 -56.00 15 7 Si 0.96 46.69 29.57 68.60 2.03 48.71 15 8 H -0.29 -14.20 7.11 99.48 0.71 -13.49 15 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 15 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 11 C 0.20 7.57 6.25 85.63 0.54 8.10 15 12 C 0.06 2.17 7.28 46.89 0.34 2.51 15 13 N -0.32 -14.21 12.05 -40.63 -0.49 -14.70 15 14 O -0.26 -10.07 12.52 -38.30 -0.48 -10.55 15 15 C 0.00 0.04 8.24 72.59 0.60 0.64 15 16 C -0.14 -3.16 7.07 30.77 0.22 -2.95 15 17 H 0.02 0.91 7.34 -2.39 -0.02 0.89 15 18 H 0.01 0.33 7.34 -2.39 -0.02 0.32 15 19 H 0.02 1.01 8.03 -2.39 -0.02 0.99 15 20 H 0.25 14.56 8.31 -92.70 -0.77 13.79 15 21 H 0.10 3.14 8.07 -2.39 -0.02 3.12 15 22 H 0.10 3.27 8.04 -2.39 -0.02 3.25 15 23 H 0.13 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 26 H 0.13 2.10 8.14 -2.38 -0.02 2.08 15 Total: -1.00 -71.21 228.93 4.61 -66.59 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: 1.16 Total: -4.33 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.08 Total: 2.84 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -2.17 Total: -103.26 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.48 Total: -10.55 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -71.21 4.61 -66.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641695625.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.965 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds