Wall clock time and date at job start Mon Mar 30 2020 02:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.42996 * 2 1 4 4 C 1.53087 * 109.44863 * 240.06865 * 2 1 3 5 5 C 1.53331 * 109.13150 * 179.43426 * 4 2 1 6 6 H 1.08997 * 109.68496 * 172.08716 * 5 4 2 7 7 C 1.53002 * 109.67925 * 292.60494 * 5 4 2 8 8 N 1.47069 * 108.36727 * 52.35990 * 5 4 2 9 9 C 1.36941 * 120.77346 * 128.75769 * 8 5 4 10 10 H 1.08003 * 119.99853 * 332.28519 * 9 8 5 11 11 C 1.38809 * 119.99728 * 152.28442 * 9 8 5 12 12 N 1.31623 * 120.00422 * 343.21287 * 11 9 8 13 13 Si 1.86807 * 119.99620 * 163.21164 * 11 9 8 14 14 H 1.48493 * 109.47271 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47037 * 120.00191 * 13 11 9 16 16 H 1.48500 * 109.46862 * 239.99945 * 13 11 9 17 17 C 1.46956 * 118.44731 * 308.73313 * 8 5 4 18 18 N 1.46876 * 109.51718 * 119.89148 * 2 1 3 19 19 H 1.08989 * 109.47442 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46916 * 299.93256 * 1 2 3 21 21 H 1.09000 * 109.46998 * 59.92823 * 1 2 3 22 22 H 1.09000 * 109.53803 * 59.51554 * 4 2 1 23 23 H 1.09006 * 109.54364 * 299.35172 * 4 2 1 24 24 H 1.09000 * 109.47065 * 60.00078 * 7 5 4 25 25 H 1.09006 * 109.47173 * 179.97438 * 7 5 4 26 26 H 1.08994 * 109.47349 * 299.99743 * 7 5 4 27 27 H 0.96998 * 120.00084 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.57779 * 172.38761 * 17 8 5 29 29 H 1.09001 * 109.57956 * 292.77666 * 17 8 5 30 30 H 1.00899 * 110.99499 * 307.09863 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0398 -0.7203 -1.2510 5 6 3.5730 -0.7036 -1.2508 6 1 3.9471 -1.3319 -2.0591 7 6 4.0727 0.7301 -1.4391 8 7 4.0419 -1.2269 0.0412 9 6 4.9727 -2.2300 0.0947 10 1 5.0488 -2.9398 -0.7158 11 6 5.8183 -2.3344 1.1905 12 7 5.9653 -1.3134 2.0081 13 14 6.7476 -3.9240 1.5049 14 1 6.4108 -4.9116 0.4484 15 1 8.2081 -3.6558 1.4850 16 1 6.3624 -4.4684 2.8317 17 6 3.4888 -0.6478 1.2734 18 7 2.0207 -0.6899 1.2002 19 1 -0.3634 -1.0275 -0.0005 20 1 -0.3633 0.5128 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 1.6697 -0.2112 -2.1409 23 1 1.6864 -1.7514 -1.2475 24 1 3.7044 1.3533 -0.6242 25 1 5.1628 0.7381 -1.4380 26 1 3.7072 1.1206 -2.3888 27 1 6.5564 -1.3862 2.7736 28 1 3.8283 -1.2257 2.1330 29 1 3.8201 0.3859 1.3719 30 1 1.6059 -0.3029 2.0346 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019332979.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:42 Heat of formation + Delta-G solvation = 19.539384 kcal Electronic energy + Delta-G solvation = -11976.297465 eV Core-core repulsion = 9999.907069 eV Total energy + Delta-G solvation = -1976.390396 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.09046 -33.87668 -32.28475 -30.65661 -28.23176 -26.00315 -24.22825 -22.40816 -21.02207 -18.24392 -16.66996 -15.18725 -14.65503 -14.13472 -13.80242 -13.64940 -12.99681 -12.48142 -12.33712 -11.74737 -11.63024 -11.13359 -11.00134 -10.87674 -10.70346 -10.34995 -10.16159 -9.85851 -9.64994 -9.54921 -8.55907 -7.51132 -6.62656 -5.79536 -3.18920 3.39952 3.47565 3.50590 4.50288 5.01949 5.38816 5.47307 5.50969 5.66526 5.88415 6.00524 6.12952 6.22268 6.28799 6.35782 6.44740 6.50676 6.66411 6.78363 6.92328 7.01729 7.25829 7.41531 7.81248 8.06175 8.29235 8.50755 9.25328 9.86878 10.45696 11.31486 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056888 B = 0.013329 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.075528 B = 2100.127959 C = 2238.901999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.060 0.940 7 C -0.159 4.159 8 N -0.577 5.577 9 C -0.243 4.243 10 H 0.066 0.934 11 C 0.002 3.998 12 N -0.908 5.908 13 Si 0.905 3.095 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.289 1.289 17 C 0.336 3.664 18 N -0.709 5.709 19 H 0.058 0.942 20 H 0.045 0.955 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.253 0.747 28 H 0.099 0.901 29 H -0.008 1.008 30 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 2.823 -3.431 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.044 0.956 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.079 0.921 7 C -0.218 4.218 8 N -0.300 5.300 9 C -0.372 4.372 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.553 5.553 13 Si 0.735 3.265 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.215 1.215 17 C 0.122 3.878 18 N -0.344 5.344 19 H 0.078 0.922 20 H 0.064 0.936 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.009 0.991 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.978 2.189 -3.578 8.141 hybrid contribution 0.686 0.252 0.542 0.910 sum -6.292 2.441 -3.036 7.400 Atomic orbital electron populations 1.21863 0.96022 1.01800 1.00433 1.21302 0.93455 0.94926 0.92615 0.95621 1.22071 0.97799 1.00407 0.95410 1.20619 0.91330 0.92842 0.89859 0.92133 1.22256 1.01443 0.99132 0.98985 1.44049 1.45503 1.41434 0.99025 1.19187 1.09204 1.03259 1.05595 0.91625 1.25041 0.97402 0.97446 0.99750 1.70004 1.39833 1.28385 1.17088 0.86171 0.79046 0.83319 0.77929 1.20231 1.21812 1.21541 1.21271 0.79980 0.94956 0.91550 1.60936 1.11404 1.59003 1.03092 0.92245 0.93554 0.93093 0.93162 0.91776 0.93775 0.92844 0.94442 0.93653 0.88297 0.99080 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.42 37.16 0.35 -1.75 16 2 C 0.09 1.60 2.81 -67.68 -0.19 1.41 16 3 H 0.03 0.49 6.62 -51.93 -0.34 0.14 16 4 C -0.12 -2.22 5.00 -26.51 -0.13 -2.35 16 5 C 0.16 3.53 3.31 -67.45 -0.22 3.30 16 6 H 0.06 1.33 7.95 -51.93 -0.41 0.91 16 7 C -0.16 -3.19 9.12 37.16 0.34 -2.86 16 8 N -0.58 -15.00 2.79 -168.05 -0.47 -15.47 16 9 C -0.24 -6.85 9.61 -15.06 -0.14 -6.99 16 10 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 11 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 12 N -0.91 -26.64 11.18 55.49 0.62 -26.02 16 13 Si 0.91 22.12 29.59 -169.99 -5.03 17.09 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 C 0.34 8.40 5.59 -62.66 -0.35 8.05 16 18 N -0.71 -14.77 6.61 -109.78 -0.73 -15.50 16 19 H 0.06 0.89 8.14 -51.94 -0.42 0.47 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.04 0.91 5.89 -51.93 -0.31 0.60 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 2.76 6.09 -51.93 -0.32 2.45 16 29 H -0.01 -0.21 7.56 -51.93 -0.39 -0.61 16 30 H 0.33 5.99 8.78 -39.29 -0.34 5.65 16 LS Contribution 237.36 15.07 3.58 3.58 Total: -1.00 -29.64 237.36 -7.09 -36.73 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.62 Total: 0.82 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.44 Total: -1.24 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.57 Total: -56.99 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.64 -7.09 -36.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019332979.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.272 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds