Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.44916 * 2 1 4 4 C 1.53092 * 109.45021 * 119.91690 * 2 1 3 5 5 C 1.52903 * 109.13564 * 180.48510 * 4 2 1 6 6 H 1.08999 * 109.61852 * 188.00843 * 5 4 2 7 7 C 1.53003 * 109.53051 * 67.59023 * 5 4 2 8 8 N 1.47074 * 108.59460 * 307.82890 * 5 4 2 9 9 C 1.36940 * 120.77505 * 231.24387 * 8 5 4 10 10 H 1.08002 * 120.00185 * 27.33584 * 9 8 5 11 11 C 1.38815 * 119.99282 * 207.61880 * 9 8 5 12 12 N 1.31611 * 120.00431 * 16.48616 * 11 9 8 13 13 Si 1.86800 * 119.99448 * 196.48437 * 11 9 8 14 14 H 1.48498 * 109.47427 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46979 * 119.99756 * 13 11 9 16 16 H 1.48498 * 109.47250 * 239.99791 * 13 11 9 17 17 C 1.46959 * 118.44546 * 50.95826 * 8 5 4 18 18 N 1.46873 * 109.45445 * 240.05387 * 2 1 3 19 19 H 1.09001 * 109.47407 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47341 * 299.95039 * 1 2 3 21 21 H 1.09002 * 109.46837 * 59.94896 * 1 2 3 22 22 H 1.09008 * 109.53754 * 300.48898 * 4 2 1 23 23 H 1.09005 * 109.53774 * 60.64987 * 4 2 1 24 24 H 1.09005 * 109.46715 * 300.90985 * 7 5 4 25 25 H 1.09003 * 109.46833 * 60.90672 * 7 5 4 26 26 H 1.08992 * 109.47200 * 180.91180 * 7 5 4 27 27 H 0.97004 * 120.00154 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.57482 * 67.48348 * 17 8 5 29 29 H 1.08998 * 109.57497 * 187.86822 * 17 8 5 30 30 H 1.00902 * 111.00475 * 52.85142 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0397 -0.7200 1.2512 5 6 3.5687 -0.7052 1.2500 6 1 3.9414 -1.3349 2.0579 7 6 4.0665 0.7288 1.4420 8 7 4.0417 -1.2249 -0.0419 9 6 4.9729 -2.2276 -0.0953 10 1 5.0510 -2.9358 0.7164 11 6 5.8205 -2.3299 -1.1898 12 7 5.9639 -1.3097 -2.0088 13 14 6.7575 -3.9158 -1.5003 14 1 6.4237 -4.9032 -0.4425 15 1 6.3765 -4.4643 -2.8267 16 1 8.2167 -3.6410 -1.4789 17 6 3.4869 -0.6475 -1.2742 18 7 2.0191 -0.6913 -1.2000 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5130 0.8904 21 1 -0.3633 0.5146 -0.8896 22 1 1.6696 -0.2107 2.1411 23 1 1.6863 -1.7511 1.2479 24 1 3.6837 1.3570 0.6377 25 1 3.7140 1.1105 2.4003 26 1 5.1562 0.7405 1.4249 27 1 6.5559 -1.3814 -2.7739 28 1 3.8170 0.3866 -1.3737 29 1 3.8267 -1.2256 -2.1335 30 1 1.6032 -0.3055 -2.0344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019332984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = 19.615662 kcal Electronic energy + Delta-G solvation = -11977.670485 eV Core-core repulsion = 10001.283396 eV Total energy + Delta-G solvation = -1976.387089 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.11052 -33.87501 -32.30286 -30.65898 -28.23201 -26.00297 -24.22679 -22.40637 -21.03244 -18.24182 -16.66932 -15.18867 -14.65764 -14.13957 -13.80401 -13.64420 -13.00156 -12.48162 -12.34464 -11.74837 -11.63116 -11.13178 -10.99924 -10.87596 -10.70419 -10.34680 -10.16089 -9.85218 -9.65136 -9.54958 -8.56253 -7.51374 -6.62672 -5.79451 -3.18791 3.39987 3.47574 3.50583 4.50310 5.02064 5.38931 5.47186 5.51021 5.66670 5.88221 6.00516 6.12851 6.22191 6.29293 6.35628 6.44609 6.51033 6.66741 6.78242 6.92548 7.01779 7.26136 7.41538 7.81196 8.05997 8.29262 8.50687 9.25456 9.86960 10.45727 11.31675 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.057003 B = 0.013325 C = 0.012499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.087547 B = 2100.756670 C = 2239.714352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.060 0.940 7 C -0.159 4.159 8 N -0.577 5.577 9 C -0.243 4.243 10 H 0.066 0.934 11 C 0.002 3.998 12 N -0.908 5.908 13 Si 0.905 3.095 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.291 1.291 17 C 0.336 3.664 18 N -0.709 5.709 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.253 0.747 28 H -0.008 1.008 29 H 0.099 0.901 30 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 2.815 3.434 8.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.044 0.956 4 C -0.157 4.157 5 C 0.054 3.946 6 H 0.079 0.921 7 C -0.218 4.218 8 N -0.300 5.300 9 C -0.372 4.372 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.553 5.553 13 Si 0.735 3.265 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.218 1.218 17 C 0.122 3.878 18 N -0.344 5.344 19 H 0.078 0.922 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.009 0.991 29 H 0.117 0.883 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.980 2.182 3.582 8.143 hybrid contribution 0.686 0.251 -0.538 0.907 sum -6.294 2.433 3.044 7.403 Atomic orbital electron populations 1.21864 0.96024 1.01802 1.00433 1.21309 0.93466 0.94932 0.92622 0.95588 1.22002 0.97828 1.00424 0.95446 1.20530 0.91359 0.92883 0.89854 0.92150 1.22266 1.01498 0.99145 0.98933 1.44041 1.45317 1.41653 0.98998 1.19189 1.09084 1.03371 1.05604 0.91623 1.25038 0.97385 0.97447 0.99767 1.70000 1.39835 1.28420 1.17058 0.86171 0.79085 0.83282 0.77919 1.20233 1.21543 1.21811 1.21273 0.79971 0.94974 0.91553 1.60955 1.11384 1.58963 1.03112 0.92243 0.93103 0.93547 0.93126 0.91789 0.93789 0.94451 0.92823 0.93656 0.99071 0.88306 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.42 37.15 0.35 -1.75 16 2 C 0.09 1.59 2.81 -67.68 -0.19 1.40 16 3 H 0.03 0.49 6.59 -51.92 -0.34 0.15 16 4 C -0.12 -2.22 4.98 -26.73 -0.13 -2.36 16 5 C 0.16 3.53 3.30 -67.67 -0.22 3.31 16 6 H 0.06 1.32 7.95 -51.93 -0.41 0.91 16 7 C -0.16 -3.20 9.11 37.16 0.34 -2.86 16 8 N -0.58 -15.01 2.79 -168.30 -0.47 -15.47 16 9 C -0.24 -6.85 9.61 -15.06 -0.14 -7.00 16 10 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 11 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 12 N -0.91 -26.64 11.18 55.49 0.62 -26.02 16 13 Si 0.91 22.12 29.59 -169.99 -5.03 17.09 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 17 C 0.34 8.40 5.59 -62.67 -0.35 8.05 16 18 N -0.71 -14.77 6.61 -109.79 -0.73 -15.49 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 24 H 0.04 0.90 5.90 -51.93 -0.31 0.60 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H -0.01 -0.21 7.61 -51.93 -0.39 -0.61 16 29 H 0.10 2.76 6.10 -51.93 -0.32 2.45 16 30 H 0.33 5.99 8.77 -39.29 -0.34 5.65 16 LS Contribution 237.33 15.07 3.58 3.58 Total: -1.00 -29.65 237.33 -7.09 -36.74 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.62 Total: 0.83 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.44 Total: -1.25 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.57 Total: -56.99 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.65 -7.09 -36.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019332984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds