Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.44916 * 2 1 4 4 C 1.53092 * 109.45021 * 119.91690 * 2 1 3 5 5 C 1.52903 * 109.13564 * 180.48510 * 4 2 1 6 6 H 1.08999 * 109.61852 * 188.00843 * 5 4 2 7 7 C 1.53003 * 109.53051 * 67.59023 * 5 4 2 8 8 N 1.47074 * 108.59460 * 307.82890 * 5 4 2 9 9 C 1.36940 * 120.77505 * 231.24387 * 8 5 4 10 10 H 1.08002 * 120.00185 * 27.33584 * 9 8 5 11 11 C 1.38815 * 119.99282 * 207.61880 * 9 8 5 12 12 N 1.31611 * 120.00431 * 16.48616 * 11 9 8 13 13 Si 1.86800 * 119.99448 * 196.48437 * 11 9 8 14 14 H 1.48498 * 109.47427 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46979 * 119.99756 * 13 11 9 16 16 H 1.48498 * 109.47250 * 239.99791 * 13 11 9 17 17 C 1.46959 * 118.44546 * 50.95826 * 8 5 4 18 18 N 1.46873 * 109.45445 * 240.05387 * 2 1 3 19 19 H 1.09001 * 109.47407 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47341 * 299.95039 * 1 2 3 21 21 H 1.09002 * 109.46837 * 59.94896 * 1 2 3 22 22 H 1.09008 * 109.53754 * 300.48898 * 4 2 1 23 23 H 1.09005 * 109.53774 * 60.64987 * 4 2 1 24 24 H 1.09005 * 109.46715 * 300.90985 * 7 5 4 25 25 H 1.09003 * 109.46833 * 60.90672 * 7 5 4 26 26 H 1.08992 * 109.47200 * 180.91180 * 7 5 4 27 27 H 0.97004 * 120.00154 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.57482 * 67.48348 * 17 8 5 29 29 H 1.08998 * 109.57497 * 187.86822 * 17 8 5 30 30 H 1.00902 * 111.00475 * 52.85142 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0397 -0.7200 1.2512 5 6 3.5687 -0.7052 1.2500 6 1 3.9414 -1.3349 2.0579 7 6 4.0665 0.7288 1.4420 8 7 4.0417 -1.2249 -0.0419 9 6 4.9729 -2.2276 -0.0953 10 1 5.0510 -2.9358 0.7164 11 6 5.8205 -2.3299 -1.1898 12 7 5.9639 -1.3097 -2.0088 13 14 6.7575 -3.9158 -1.5003 14 1 6.4237 -4.9032 -0.4425 15 1 6.3765 -4.4643 -2.8267 16 1 8.2167 -3.6410 -1.4789 17 6 3.4869 -0.6475 -1.2742 18 7 2.0191 -0.6913 -1.2000 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5130 0.8904 21 1 -0.3633 0.5146 -0.8896 22 1 1.6696 -0.2107 2.1411 23 1 1.6863 -1.7511 1.2479 24 1 3.6837 1.3570 0.6377 25 1 3.7140 1.1105 2.4003 26 1 5.1562 0.7405 1.4249 27 1 6.5559 -1.3814 -2.7739 28 1 3.8170 0.3866 -1.3737 29 1 3.8267 -1.2256 -2.1335 30 1 1.6032 -0.3055 -2.0344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019332984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -0.748482 kcal Electronic energy + Delta-G solvation = -11978.553540 eV Core-core repulsion = 10001.283396 eV Total energy + Delta-G solvation = -1977.270144 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81665 -35.71057 -34.10880 -32.49116 -30.00148 -27.49544 -26.20846 -24.29498 -22.59747 -20.05655 -18.58141 -17.12292 -16.37444 -15.86187 -15.62442 -15.38176 -14.65178 -14.29008 -14.05394 -13.36518 -13.01055 -12.92138 -12.63461 -12.53892 -12.44000 -12.22987 -12.04133 -11.58623 -11.46957 -11.20222 -10.64157 -9.28595 -8.64374 -7.92326 -5.35054 1.45283 1.47445 1.58347 2.49101 3.18423 3.49026 3.73975 4.02726 4.15010 4.44569 4.52016 4.59862 4.70477 4.76505 4.93822 4.99659 5.04676 5.07923 5.16861 5.27472 5.43540 5.46481 5.59182 5.66384 6.28356 6.42089 6.67449 7.16553 7.84151 8.37737 9.16922 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.057003 B = 0.013325 C = 0.012499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.087547 B = 2100.756670 C = 2239.714352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.082 3.918 3 H 0.024 0.976 4 C -0.110 4.110 5 C 0.148 3.852 6 H 0.055 0.945 7 C -0.147 4.147 8 N -0.596 5.596 9 C -0.258 4.258 10 H 0.064 0.936 11 C -0.048 4.048 12 N -0.938 5.938 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.289 1.289 16 H -0.290 1.290 17 C 0.353 3.647 18 N -0.711 5.711 19 H 0.055 0.945 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.251 0.749 28 H -0.031 1.031 29 H 0.064 0.936 30 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 2.864 4.462 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 H 0.042 0.958 4 C -0.149 4.149 5 C 0.041 3.959 6 H 0.073 0.927 7 C -0.206 4.206 8 N -0.320 5.320 9 C -0.389 4.389 10 H 0.081 0.919 11 C -0.244 4.244 12 N -0.584 5.584 13 Si 0.799 3.201 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.138 3.862 18 N -0.347 5.347 19 H 0.074 0.926 20 H 0.095 0.905 21 H 0.078 0.922 22 H 0.106 0.894 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.060 0.940 28 H -0.014 1.014 29 H 0.082 0.918 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.394 2.242 4.634 9.847 hybrid contribution 1.079 0.274 -0.809 1.376 sum -7.315 2.516 3.825 8.630 Atomic orbital electron populations 1.21767 0.92595 1.02223 1.02460 1.21471 0.96106 0.94214 0.90954 0.95766 1.21928 0.95193 1.00403 0.97392 1.20816 0.93670 0.93500 0.87866 0.92651 1.22116 0.99705 0.97984 1.00770 1.44274 1.45389 1.41720 1.00638 1.19476 1.09544 1.04121 1.05724 0.91860 1.25796 0.98600 1.00297 0.99670 1.70145 1.40649 1.30159 1.17432 0.85159 0.77569 0.79734 0.77665 1.19232 1.21597 1.21691 1.20755 0.82348 0.92765 0.90292 1.60824 1.08744 1.60004 1.05095 0.92583 0.90515 0.92174 0.89394 0.92971 0.94563 0.90462 0.95426 0.93970 1.01428 0.91818 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.42 71.98 0.68 -2.71 16 2 C 0.08 2.81 2.81 44.95 0.13 2.94 16 3 H 0.02 0.86 6.59 -2.38 -0.02 0.85 16 4 C -0.11 -3.88 4.98 30.59 0.15 -3.73 16 5 C 0.15 6.33 3.30 44.85 0.15 6.48 16 6 H 0.06 2.39 7.95 -2.39 -0.02 2.37 16 7 C -0.15 -5.71 9.11 71.98 0.66 -5.06 16 8 N -0.60 -31.33 2.79 -686.39 -1.91 -33.24 16 9 C -0.26 -14.79 9.61 84.03 0.81 -13.98 16 10 H 0.06 3.56 7.88 -2.91 -0.02 3.54 16 11 C -0.05 -2.78 4.93 84.86 0.42 -2.36 16 12 N -0.94 -56.44 11.18 21.65 0.24 -56.19 16 13 Si 0.97 46.05 29.59 68.60 2.03 48.08 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 16 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 17 C 0.35 18.00 5.59 170.58 0.95 18.95 16 18 N -0.71 -29.07 6.61 -501.26 -3.31 -32.38 16 19 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 23 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.04 1.44 5.90 -2.38 -0.01 1.43 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H -0.03 -1.71 7.61 -2.39 -0.02 -1.72 16 29 H 0.06 3.69 6.10 -2.39 -0.01 3.67 16 30 H 0.34 12.17 8.77 -89.69 -0.79 11.38 16 Total: -1.00 -64.23 237.33 1.31 -62.93 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.32 Total: 10.28 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 3.94 Total: 0.54 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -4.99 Total: -121.82 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -64.23 1.31 -62.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019332984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.179 kcal (2) G-P(sol) polarization free energy of solvation -64.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds