Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48501 * 109.46608 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47144 * 299.99433 * 3 2 1 6 6 H 1.48494 * 109.47494 * 59.99688 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 N 1.46910 * 109.56990 * 177.59037 * 13 12 11 15 15 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 16 16 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 17 17 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 18 18 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 19 19 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 20 20 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 21 21 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 22 22 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 23 23 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 24 24 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 25 25 H 1.00895 * 111.00113 * 60.28833 * 14 13 12 26 26 H 1.00906 * 110.99472 * 184.23791 * 14 13 12 27 27 H 1.09002 * 109.50148 * 182.40235 * 15 13 12 28 28 H 1.08998 * 109.50646 * 62.28511 * 15 13 12 29 29 H 1.09006 * 109.45826 * 294.17926 * 16 10 9 30 30 H 1.09003 * 109.46067 * 54.15415 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 7 5.5867 -6.1067 -0.4392 15 6 3.9548 -4.9380 0.9669 16 6 3.0808 -3.6851 1.0590 17 1 -0.4851 0.8401 -0.0004 18 1 0.6971 -2.5940 0.9413 19 1 0.5554 -2.5214 -0.8316 20 1 2.2984 -3.4265 -2.2039 21 1 3.6142 -2.6253 -1.3128 22 1 4.4373 -4.6722 -2.4335 23 1 3.2125 -5.6400 -1.5768 24 1 5.4507 -4.0155 -0.2819 25 1 6.1454 -6.0919 -1.2792 26 1 6.1640 -6.2452 0.3767 27 1 4.6190 -4.9826 1.8300 28 1 3.3201 -5.8239 0.9492 29 1 3.7166 -2.8002 1.0906 30 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036754044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -10.738991 kcal Electronic energy + Delta-G solvation = -11612.932085 eV Core-core repulsion = 9635.228720 eV Total energy + Delta-G solvation = -1977.703365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.39766 -34.74013 -32.44083 -30.20469 -29.69933 -26.09858 -23.18139 -22.46011 -20.86210 -19.01286 -16.36494 -15.34887 -15.21686 -14.79429 -14.21833 -14.11256 -13.35419 -12.61808 -12.45194 -11.94197 -11.71112 -11.09263 -11.05976 -10.66866 -10.51757 -10.36162 -10.30164 -9.78268 -9.72145 -9.50288 -8.54872 -8.43459 -7.12664 -6.02220 -4.11741 3.25205 3.33310 3.36421 4.39812 4.65645 5.07497 5.22773 5.27843 5.38897 5.67149 5.88351 6.11386 6.15133 6.23448 6.30828 6.45731 6.57659 6.67430 6.81467 6.93596 7.31866 7.32739 7.53921 7.55547 7.90714 8.10386 8.31387 8.35905 8.99503 9.55018 11.02423 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062132 B = 0.010558 C = 0.010139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.543503 B = 2651.272327 C = 2760.905216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.185 3.815 10 N -0.541 5.541 11 C 0.066 3.934 12 C -0.108 4.108 13 C 0.090 3.910 14 N -0.848 5.848 15 C -0.108 4.108 16 C 0.064 3.936 17 H 0.262 0.738 18 H 0.027 0.973 19 H 0.035 0.965 20 H 0.066 0.934 21 H 0.036 0.964 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.335 0.665 26 H 0.335 0.665 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.683 -7.132 -0.508 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.060 3.940 10 N -0.265 5.265 11 C -0.063 4.063 12 C -0.146 4.146 13 C -0.021 4.021 14 N -0.377 5.377 15 C -0.147 4.147 16 C -0.065 4.065 17 H 0.071 0.929 18 H 0.045 0.955 19 H 0.053 0.947 20 H 0.085 0.915 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.540 -7.826 -0.553 10.881 hybrid contribution 1.760 2.514 0.101 3.071 sum 9.300 -5.312 -0.452 10.719 Atomic orbital electron populations 1.69956 1.05985 1.26688 1.50307 1.24974 0.94775 0.99128 0.94992 0.86600 0.80068 0.84025 0.77687 1.19950 1.20913 1.20925 1.21799 0.93322 0.92175 1.51425 0.92566 1.19759 0.90964 0.85479 0.97809 1.62435 1.17258 1.46177 1.00624 1.21817 0.95678 0.94955 0.93874 1.21643 0.97368 0.99849 0.95766 1.21409 0.94200 0.89512 0.96982 1.58794 1.31637 1.40034 1.07208 1.21643 0.97832 0.99896 0.95294 1.21836 0.94817 0.95150 0.94713 0.92862 0.95456 0.94686 0.91507 0.94584 0.92963 0.90985 0.95409 0.85293 0.85290 0.92979 0.90931 0.94800 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.55 -15.24 7.72 -34.44 -0.27 -15.51 16 8 H 0.06 1.56 5.86 -52.49 -0.31 1.25 16 9 C 0.19 4.88 5.12 -4.98 -0.03 4.85 16 10 N -0.54 -11.98 4.86 -236.11 -1.15 -13.13 16 11 C 0.07 1.33 5.03 -3.83 -0.02 1.31 16 12 C -0.11 -1.78 5.68 -26.65 -0.15 -1.93 16 13 C 0.09 1.38 3.31 -67.59 -0.22 1.15 16 14 N -0.85 -10.65 9.25 -4.56 -0.04 -10.70 16 15 C -0.11 -1.77 5.64 -26.65 -0.15 -1.92 16 16 C 0.06 1.28 5.12 -3.84 -0.02 1.26 16 17 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 18 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 19 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 20 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 21 H 0.04 0.79 6.73 -51.93 -0.35 0.44 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.34 3.64 9.04 -39.29 -0.36 3.28 16 26 H 0.34 3.63 9.00 -39.29 -0.35 3.28 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.73 6.86 -51.93 -0.36 0.37 16 30 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 240.26 15.07 3.62 3.62 Total: -1.00 -29.29 240.26 -7.46 -36.75 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.65 Total: 1.66 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.95 Total: -9.06 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.45 Total: -49.51 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.29 -7.46 -36.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036754044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.015 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds