Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48501 * 109.46608 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47144 * 299.99433 * 3 2 1 6 6 H 1.48494 * 109.47494 * 59.99688 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 N 1.46910 * 109.56990 * 177.59037 * 13 12 11 15 15 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 16 16 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 17 17 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 18 18 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 19 19 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 20 20 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 21 21 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 22 22 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 23 23 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 24 24 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 25 25 H 1.00895 * 111.00113 * 60.28833 * 14 13 12 26 26 H 1.00906 * 110.99472 * 184.23791 * 14 13 12 27 27 H 1.09002 * 109.50148 * 182.40235 * 15 13 12 28 28 H 1.08998 * 109.50646 * 62.28511 * 15 13 12 29 29 H 1.09006 * 109.45826 * 294.17926 * 16 10 9 30 30 H 1.09003 * 109.46067 * 54.15415 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 7 5.5867 -6.1067 -0.4392 15 6 3.9548 -4.9380 0.9669 16 6 3.0808 -3.6851 1.0590 17 1 -0.4851 0.8401 -0.0004 18 1 0.6971 -2.5940 0.9413 19 1 0.5554 -2.5214 -0.8316 20 1 2.2984 -3.4265 -2.2039 21 1 3.6142 -2.6253 -1.3128 22 1 4.4373 -4.6722 -2.4335 23 1 3.2125 -5.6400 -1.5768 24 1 5.4507 -4.0155 -0.2819 25 1 6.1454 -6.0919 -1.2792 26 1 6.1640 -6.2452 0.3767 27 1 4.6190 -4.9826 1.8300 28 1 3.3201 -5.8239 0.9492 29 1 3.7166 -2.8002 1.0906 30 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036754044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -33.206209 kcal Electronic energy + Delta-G solvation = -11613.906336 eV Core-core repulsion = 9635.228720 eV Total energy + Delta-G solvation = -1978.677617 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.95408 -36.31501 -34.44422 -31.70405 -31.22171 -28.05471 -25.03012 -23.96142 -22.54532 -20.55994 -18.47102 -17.00750 -16.46126 -16.19377 -15.83750 -15.78942 -15.16013 -14.39020 -14.00093 -13.66899 -13.30755 -12.93169 -12.91189 -12.28909 -12.22324 -12.17094 -12.01469 -11.73342 -11.30537 -11.18112 -10.63522 -9.58521 -9.02672 -8.17067 -6.38009 1.34187 1.35005 1.46873 2.34916 3.06572 3.34658 3.61372 3.90708 3.98948 4.35667 4.40553 4.58455 4.69786 4.88817 4.89120 4.94960 5.03502 5.17232 5.28061 5.30448 5.31125 5.45415 5.72105 6.03910 6.25015 6.28457 6.56083 6.68820 6.83729 7.33701 8.85077 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062132 B = 0.010558 C = 0.010139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.543503 B = 2651.272327 C = 2760.905216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.198 3.802 10 N -0.543 5.543 11 C 0.067 3.933 12 C -0.098 4.098 13 C 0.095 3.905 14 N -0.844 5.844 15 C -0.098 4.098 16 C 0.064 3.936 17 H 0.266 0.734 18 H 0.003 0.997 19 H 0.007 0.993 20 H 0.055 0.945 21 H 0.018 0.982 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.025 0.975 25 H 0.349 0.651 26 H 0.349 0.651 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.017 0.983 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 -7.501 -0.579 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.071 3.929 10 N -0.267 5.267 11 C -0.062 4.062 12 C -0.136 4.136 13 C -0.016 4.016 14 N -0.375 5.375 15 C -0.137 4.137 16 C -0.065 4.065 17 H 0.075 0.925 18 H 0.021 0.979 19 H 0.025 0.975 20 H 0.074 0.926 21 H 0.037 0.963 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.162 0.838 26 H 0.162 0.838 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.570 -8.220 -0.625 12.632 hybrid contribution 1.116 2.578 0.124 2.812 sum 10.687 -5.642 -0.502 12.095 Atomic orbital electron populations 1.70077 1.07604 1.27889 1.51055 1.25861 0.95665 1.02974 0.94485 0.85480 0.78834 0.79250 0.77955 1.19206 1.20206 1.20222 1.21994 0.93314 0.92973 1.51268 0.92648 1.19428 0.91367 0.86889 0.95232 1.62384 1.17941 1.43954 1.02425 1.21848 0.95440 0.96485 0.92452 1.21541 0.97147 0.97278 0.97660 1.21226 0.94109 0.90736 0.95544 1.58665 1.32248 1.37958 1.08636 1.21546 0.97639 0.97286 0.97192 1.21887 0.94545 0.96611 0.93443 0.92527 0.97900 0.97516 0.92613 0.96341 0.90547 0.91254 0.95707 0.83796 0.83761 0.90382 0.91169 0.96482 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.56 -31.51 7.72 25.60 0.20 -31.31 16 8 H 0.06 3.09 5.86 -2.91 -0.02 3.08 16 9 C 0.20 10.78 5.12 85.56 0.44 11.22 16 10 N -0.54 -24.42 4.86 -900.92 -4.38 -28.80 16 11 C 0.07 2.69 5.03 86.33 0.43 3.13 16 12 C -0.10 -3.04 5.68 30.65 0.17 -2.86 16 13 C 0.10 2.67 3.31 44.99 0.15 2.82 16 14 N -0.84 -18.13 9.25 -168.34 -1.56 -19.69 16 15 C -0.10 -3.00 5.64 30.64 0.17 -2.83 16 16 C 0.06 2.55 5.12 86.32 0.44 2.99 16 17 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 18 H 0.00 0.17 8.08 -2.38 -0.02 0.15 16 19 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 20 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 21 H 0.02 0.80 6.73 -2.39 -0.02 0.79 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.35 6.21 9.04 -89.70 -0.81 5.40 16 26 H 0.35 6.18 9.00 -89.69 -0.81 5.38 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.02 0.73 6.86 -2.38 -0.02 0.71 16 30 H 0.06 2.37 8.08 -2.39 -0.02 2.36 16 Total: -1.00 -62.82 240.26 -1.65 -64.46 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.49 Total: 9.20 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 2.47 Total: -15.84 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -5.65 Total: -104.13 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -62.82 -1.65 -64.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036754044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.257 kcal (2) G-P(sol) polarization free energy of solvation -62.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds