Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48551 * 111.00202 * 2 1 4 4 C 1.54374 * 104.59541 * 200.95973 * 3 2 1 5 5 C 1.54259 * 105.06107 * 23.85769 * 4 3 2 6 6 H 1.09002 * 110.32223 * 241.10101 * 5 4 3 7 7 C 1.53001 * 110.32668 * 118.99339 * 5 4 3 8 8 N 1.46496 * 109.47275 * 176.42777 * 7 5 4 9 9 C 1.36934 * 120.00255 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00117 * 179.97438 * 9 8 7 12 12 N 1.31619 * 120.00257 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00006 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47217 * 60.00036 * 13 11 9 15 15 H 1.48500 * 109.47453 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47162 * 299.99888 * 13 11 9 17 17 C 1.48561 * 110.99547 * 244.58058 * 2 1 3 18 18 H 1.08997 * 109.47341 * 60.12179 * 1 2 3 19 19 H 1.09004 * 109.47609 * 180.12652 * 1 2 3 20 20 H 1.09004 * 109.46869 * 300.11702 * 1 2 3 21 21 H 1.09004 * 110.40983 * 82.18271 * 3 2 1 22 22 H 1.08995 * 110.51512 * 319.79623 * 3 2 1 23 23 H 1.08992 * 110.32801 * 264.95820 * 4 3 2 24 24 H 1.09004 * 110.32383 * 142.75020 * 4 3 2 25 25 H 1.09003 * 109.47002 * 296.42688 * 7 5 4 26 26 H 1.09004 * 109.46984 * 56.42794 * 7 5 4 27 27 H 0.97005 * 120.00028 * 0.02562 * 8 7 5 28 28 H 0.96998 * 120.00244 * 179.97438 * 12 11 9 29 29 H 1.09005 * 110.41198 * 40.26544 * 17 2 1 30 30 H 1.08998 * 110.41368 * 277.82066 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3868 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4432 -0.0540 -1.3586 6 1 4.1483 -0.7694 -0.9353 7 6 3.7971 0.2396 -2.8179 8 7 3.8753 -1.0186 -3.5641 9 6 4.1809 -1.0052 -4.8988 10 1 4.3639 -0.0670 -5.4015 11 6 4.2555 -2.1975 -5.6057 12 7 4.0330 -3.3410 -4.9930 13 14 4.6717 -2.1792 -7.4267 14 1 6.0078 -1.5616 -7.6229 15 1 4.6882 -3.5708 -7.9448 16 1 3.6493 -1.3906 -8.1602 17 6 2.0013 -0.5953 -1.2527 18 1 -0.3634 0.5119 -0.8910 19 1 -0.3634 -1.0277 0.0023 20 1 -0.3633 0.5157 0.8890 21 1 2.0080 1.7915 1.0121 22 1 1.4105 2.0229 -0.6590 23 1 4.1483 1.1746 0.2934 24 1 3.6937 2.0995 -1.1699 25 1 3.0285 0.8755 -3.2573 26 1 4.7597 0.7492 -2.8629 27 1 3.7106 -1.8613 -3.1127 28 1 4.0848 -4.1741 -5.4871 29 1 1.4097 -0.2712 -2.1090 30 1 2.0078 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037485098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = 9.884762 kcal Electronic energy + Delta-G solvation = -11320.951055 eV Core-core repulsion = 9344.142002 eV Total energy + Delta-G solvation = -1976.809052 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77856 -34.74953 -32.39957 -30.48993 -28.40443 -26.12788 -24.22452 -22.14591 -20.85913 -19.63821 -17.00271 -15.82176 -15.18207 -14.45499 -14.28508 -13.72256 -13.17335 -12.99701 -12.81352 -12.06053 -11.57281 -11.29849 -11.23733 -11.18326 -10.81233 -10.60068 -10.39489 -10.15432 -9.91870 -9.62900 -8.84319 -8.31345 -6.88713 -5.73346 -3.01915 3.45792 3.49806 3.51167 4.26901 4.61459 4.94969 4.97777 5.25477 5.46745 5.55146 5.58173 5.62987 5.77652 5.91578 5.93635 6.09357 6.15439 6.20292 6.29178 6.38129 6.51737 6.80483 6.93370 7.06315 7.21523 7.71835 8.45695 9.56562 10.15329 10.50466 11.49527 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.071533 B = 0.008677 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.331441 B = 3226.233188 C = 3410.991459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.032 3.968 4 C -0.117 4.117 5 C -0.099 4.099 6 H 0.079 0.921 7 C 0.161 3.839 8 N -0.733 5.733 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.043 3.957 18 H 0.027 0.973 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.016 0.984 26 H 0.020 0.980 27 H 0.384 0.616 28 H 0.255 0.745 29 H 0.049 0.951 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 7.913 8.923 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.245 5.245 3 C -0.096 4.096 4 C -0.156 4.156 5 C -0.118 4.118 6 H 0.097 0.903 7 C 0.033 3.967 8 N -0.377 5.377 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.582 5.582 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C -0.084 4.084 18 H 0.045 0.955 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.218 0.782 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.283 7.654 9.233 12.735 hybrid contribution -0.185 0.108 -1.632 1.646 sum -4.469 7.763 7.601 11.748 Atomic orbital electron populations 1.22475 0.88627 1.02081 1.00277 1.65393 1.07731 1.15061 1.36323 1.23096 0.95762 0.90370 1.00389 1.22307 0.95937 0.98039 0.99312 1.22082 0.96481 0.96630 0.96629 0.90270 1.20765 0.97258 0.90167 0.88511 1.42370 1.84854 1.02938 1.07509 1.19199 1.39521 0.92743 0.85699 0.91308 1.24742 1.02791 0.95336 0.98171 1.69651 1.56305 0.96829 1.35444 0.86262 0.78201 0.76452 0.85236 1.21272 1.21661 1.21346 1.23158 0.95072 1.00340 0.89847 0.95475 0.91345 0.91818 0.90714 0.94119 0.91304 0.91210 0.96611 0.96221 0.78213 0.93478 0.93228 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 60.07 0.57 0.76 16 2 N -0.52 -7.84 5.66 -238.23 -1.35 -9.19 16 3 C 0.03 0.43 6.49 -2.19 -0.01 0.41 16 4 C -0.12 -1.66 6.65 -25.35 -0.17 -1.82 16 5 C -0.10 -1.72 3.10 -89.24 -0.28 -2.00 16 6 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 7 C 0.16 3.37 5.37 -4.04 -0.02 3.35 16 8 N -0.73 -19.13 5.46 -59.91 -0.33 -19.46 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 C 0.04 0.75 5.78 -2.18 -0.01 0.74 16 18 H 0.03 0.34 7.97 -51.93 -0.41 -0.07 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.53 7.97 -51.93 -0.41 0.11 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.93 7.71 -51.93 -0.40 0.53 16 25 H 0.02 0.34 8.02 -51.93 -0.42 -0.08 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.38 10.50 7.56 -40.82 -0.31 10.19 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.05 0.92 7.54 -51.93 -0.39 0.53 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 247.38 15.07 3.73 3.73 Total: -1.00 -30.62 247.38 -7.26 -37.88 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.85 Total: 3.44 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.17 Total: -6.15 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.95 Total: -56.63 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.62 -7.26 -37.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.767 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds