Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48551 * 111.00202 * 2 1 4 4 C 1.54374 * 104.59541 * 200.95973 * 3 2 1 5 5 C 1.54259 * 105.06107 * 23.85769 * 4 3 2 6 6 H 1.09002 * 110.32223 * 241.10101 * 5 4 3 7 7 C 1.53001 * 110.32668 * 118.99339 * 5 4 3 8 8 N 1.46496 * 109.47275 * 176.42777 * 7 5 4 9 9 C 1.36934 * 120.00255 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00117 * 179.97438 * 9 8 7 12 12 N 1.31619 * 120.00257 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00006 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47217 * 60.00036 * 13 11 9 15 15 H 1.48500 * 109.47453 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47162 * 299.99888 * 13 11 9 17 17 C 1.48561 * 110.99547 * 244.58058 * 2 1 3 18 18 H 1.08997 * 109.47341 * 60.12179 * 1 2 3 19 19 H 1.09004 * 109.47609 * 180.12652 * 1 2 3 20 20 H 1.09004 * 109.46869 * 300.11702 * 1 2 3 21 21 H 1.09004 * 110.40983 * 82.18271 * 3 2 1 22 22 H 1.08995 * 110.51512 * 319.79623 * 3 2 1 23 23 H 1.08992 * 110.32801 * 264.95820 * 4 3 2 24 24 H 1.09004 * 110.32383 * 142.75020 * 4 3 2 25 25 H 1.09003 * 109.47002 * 296.42688 * 7 5 4 26 26 H 1.09004 * 109.46984 * 56.42794 * 7 5 4 27 27 H 0.97005 * 120.00028 * 0.02562 * 8 7 5 28 28 H 0.96998 * 120.00244 * 179.97438 * 12 11 9 29 29 H 1.09005 * 110.41198 * 40.26544 * 17 2 1 30 30 H 1.08998 * 110.41368 * 277.82066 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3868 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4432 -0.0540 -1.3586 6 1 4.1483 -0.7694 -0.9353 7 6 3.7971 0.2396 -2.8179 8 7 3.8753 -1.0186 -3.5641 9 6 4.1809 -1.0052 -4.8988 10 1 4.3639 -0.0670 -5.4015 11 6 4.2555 -2.1975 -5.6057 12 7 4.0330 -3.3410 -4.9930 13 14 4.6717 -2.1792 -7.4267 14 1 6.0078 -1.5616 -7.6229 15 1 4.6882 -3.5708 -7.9448 16 1 3.6493 -1.3906 -8.1602 17 6 2.0013 -0.5953 -1.2527 18 1 -0.3634 0.5119 -0.8910 19 1 -0.3634 -1.0277 0.0023 20 1 -0.3633 0.5157 0.8890 21 1 2.0080 1.7915 1.0121 22 1 1.4105 2.0229 -0.6590 23 1 4.1483 1.1746 0.2934 24 1 3.6937 2.0995 -1.1699 25 1 3.0285 0.8755 -3.2573 26 1 4.7597 0.7492 -2.8629 27 1 3.7106 -1.8613 -3.1127 28 1 4.0848 -4.1741 -5.4871 29 1 1.4097 -0.2712 -2.1090 30 1 2.0078 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037485098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = -12.287454 kcal Electronic energy + Delta-G solvation = -11321.912514 eV Core-core repulsion = 9344.142002 eV Total energy + Delta-G solvation = -1977.770512 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.05101 -36.58985 -34.10048 -32.20162 -29.83988 -27.56835 -25.91653 -23.92205 -22.04129 -21.08020 -19.09461 -17.20389 -16.63242 -16.23716 -15.59549 -15.15513 -15.06497 -14.71939 -14.01402 -13.53842 -13.20936 -12.78313 -12.77847 -12.41124 -12.36902 -12.23326 -12.14422 -11.77107 -11.64475 -11.34925 -10.93900 -9.49370 -9.02043 -7.96098 -5.25758 1.46097 1.49683 1.55982 2.55110 3.10409 3.36656 3.66634 3.74025 4.01472 4.21169 4.33048 4.49741 4.54683 4.60750 4.65281 4.77388 4.83547 4.94967 4.97100 5.02275 5.14744 5.28372 5.39737 5.48076 5.84544 6.07683 6.25716 7.31752 8.07438 8.31613 9.27279 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.071533 B = 0.008677 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.331441 B = 3226.233188 C = 3410.991459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.033 3.967 4 C -0.111 4.111 5 C -0.095 4.095 6 H 0.068 0.932 7 C 0.162 3.838 8 N -0.746 5.746 9 C -0.251 4.251 10 H 0.075 0.925 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.276 1.276 15 H -0.294 1.294 16 H -0.278 1.278 17 C 0.049 3.951 18 H 0.025 0.975 19 H 0.066 0.934 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.016 0.984 26 H 0.024 0.976 27 H 0.374 0.626 28 H 0.252 0.748 29 H 0.032 0.968 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 9.385 9.322 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.253 5.253 3 C -0.095 4.095 4 C -0.149 4.149 5 C -0.114 4.114 6 H 0.086 0.914 7 C 0.035 3.965 8 N -0.388 5.388 9 C -0.383 4.383 10 H 0.093 0.907 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.202 1.202 15 H -0.220 1.220 16 H -0.204 1.204 17 C -0.079 4.079 18 H 0.044 0.956 19 H 0.085 0.915 20 H 0.107 0.893 21 H 0.118 0.882 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.206 0.794 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.389 9.176 9.649 14.021 hybrid contribution -0.175 -0.302 -1.698 1.734 sum -4.564 8.874 7.951 12.759 Atomic orbital electron populations 1.22552 0.87191 1.02465 1.01377 1.65393 1.09206 1.16261 1.34394 1.23190 0.94901 0.89404 1.01959 1.22306 0.97161 0.96116 0.99348 1.21983 0.96172 0.98510 0.94760 0.91360 1.20902 0.97259 0.88116 0.90194 1.42589 1.84769 1.04257 1.07232 1.19630 1.38621 0.93047 0.87006 0.90693 1.25616 1.03411 0.95022 1.02760 1.69818 1.57830 0.97269 1.37058 0.85172 0.78322 0.76242 0.79778 1.20242 1.21963 1.20397 1.22963 0.95007 0.99400 0.90546 0.95619 0.91482 0.89345 0.88194 0.93623 0.89711 0.90210 0.96581 0.95836 0.79419 0.93920 0.95005 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.53 127.69 1.22 1.52 16 2 N -0.53 -15.01 5.66 -907.63 -5.14 -20.14 16 3 C 0.03 0.78 6.49 86.45 0.56 1.35 16 4 C -0.11 -2.86 6.65 31.49 0.21 -2.65 16 5 C -0.09 -3.25 3.10 -9.90 -0.03 -3.28 16 6 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 7 C 0.16 6.74 5.37 86.38 0.46 7.20 16 8 N -0.75 -39.43 5.46 -343.45 -1.87 -41.31 16 9 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 10 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 12 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 13 Si 0.98 46.80 29.55 68.60 2.03 48.82 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 C 0.05 1.69 5.78 86.45 0.50 2.19 16 18 H 0.03 0.61 7.97 -2.39 -0.02 0.59 16 19 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.08 1.91 7.71 -2.38 -0.02 1.89 16 25 H 0.02 0.68 8.02 -2.39 -0.02 0.66 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.37 21.00 7.56 -92.70 -0.70 20.30 16 28 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.03 1.19 7.54 -2.38 -0.02 1.18 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -64.59 247.38 -0.08 -64.66 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.40 Total: 19.49 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.23 Total: -11.29 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.73 Total: -121.69 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -64.59 -0.08 -64.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.376 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds