Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47897 * 111.00118 * 2 1 4 4 C 1.53991 * 107.05971 * 145.84491 * 3 2 1 5 5 C 1.54595 * 105.13863 * 358.77372 * 4 3 2 6 6 H 1.09001 * 110.72425 * 96.57980 * 5 4 3 7 7 C 1.53001 * 110.72613 * 219.68656 * 5 4 3 8 8 N 1.46490 * 109.47264 * 182.54767 * 7 5 4 9 9 C 1.36935 * 120.00121 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00139 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00401 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99569 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00172 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.46653 * 299.99639 * 13 11 9 16 16 H 1.48495 * 109.47483 * 60.00002 * 13 11 9 17 17 C 1.48725 * 111.04124 * 117.57834 * 2 1 3 18 18 H 1.09004 * 109.47379 * 59.87468 * 1 2 3 19 19 H 1.08996 * 109.47384 * 179.87050 * 1 2 3 20 20 H 1.08999 * 109.47499 * 299.87814 * 1 2 3 21 21 H 1.09002 * 109.91634 * 26.48594 * 3 2 1 22 22 H 1.08997 * 110.08338 * 265.29217 * 3 2 1 23 23 H 1.09007 * 110.30832 * 239.85812 * 4 3 2 24 24 H 1.08993 * 110.30978 * 117.69268 * 4 3 2 25 25 H 1.09003 * 109.46836 * 62.54474 * 7 5 4 26 26 H 1.08999 * 109.47071 * 302.55514 * 7 5 4 27 27 H 0.97000 * 120.00577 * 0.02562 * 8 7 5 28 28 H 0.97001 * 119.99885 * 359.97438 * 12 11 9 29 29 H 1.08996 * 110.84049 * 81.95859 * 17 2 1 30 30 H 1.09007 * 110.58724 * 318.76842 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0930 1.3154 6 1 4.1140 -0.6533 0.6580 7 6 3.9588 -0.1308 2.7575 8 7 4.1494 -1.5229 3.1717 9 6 4.6034 -1.8062 4.4322 10 1 4.8206 -1.0034 5.1210 11 6 4.7845 -3.1254 4.8245 12 7 4.5203 -4.1039 3.9848 13 14 5.4032 -3.5118 6.5442 14 1 5.5110 -4.9833 6.7125 15 1 6.7387 -2.8926 6.7405 16 1 4.4527 -2.9668 7.5465 17 6 2.0030 -0.6426 1.2304 18 1 -0.3634 0.5158 -0.8889 19 1 -0.3634 -1.0276 -0.0023 20 1 -0.3634 0.5119 0.8910 21 1 1.2758 2.0561 0.4570 22 1 2.2116 1.7000 -1.0202 23 1 3.2136 2.0429 1.6766 24 1 4.1469 1.6454 0.2024 25 1 3.2305 0.3469 3.4129 26 1 4.9083 0.4006 2.8213 27 1 3.9547 -2.2441 2.5530 28 1 4.1987 -3.9032 3.0919 29 1 2.0092 -1.7279 1.1296 30 1 1.4243 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037485099.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = 9.891636 kcal Electronic energy + Delta-G solvation = -11330.779542 eV Core-core repulsion = 9353.970788 eV Total energy + Delta-G solvation = -1976.808754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.84163 -35.01872 -32.57202 -30.43200 -28.40377 -26.08689 -24.01960 -22.39927 -20.77754 -19.85510 -17.20062 -15.94522 -15.44920 -14.37246 -14.13044 -13.69353 -13.61009 -13.22086 -12.98851 -12.27792 -11.80034 -11.34804 -11.24472 -10.97507 -10.72994 -10.55874 -10.33346 -10.22376 -9.94530 -9.12968 -8.84962 -8.32514 -6.96364 -6.07168 -3.06246 3.53377 3.57383 3.74888 4.16336 4.69076 4.86106 4.89068 5.11401 5.39481 5.46311 5.49358 5.64652 5.70165 5.81064 5.86652 6.00241 6.01338 6.05835 6.17112 6.31473 6.40451 6.69772 6.84075 7.01043 7.15178 7.83787 8.79580 9.27418 10.13728 10.29377 11.41626 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.075117 B = 0.008572 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.661888 B = 3265.482027 C = 3467.040923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.037 3.963 4 C -0.124 4.124 5 C -0.099 4.099 6 H 0.081 0.919 7 C 0.168 3.832 8 N -0.744 5.744 9 C -0.332 4.332 10 H 0.064 0.936 11 C -0.047 4.047 12 N -0.944 5.944 13 Si 1.081 2.919 14 H -0.285 1.285 15 H -0.295 1.295 16 H -0.296 1.296 17 C 0.047 3.953 18 H 0.064 0.936 19 H 0.068 0.932 20 H 0.025 0.975 21 H 0.040 0.960 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.018 0.982 26 H 0.021 0.979 27 H 0.367 0.633 28 H 0.255 0.745 29 H 0.083 0.917 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 9.959 -6.531 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.091 4.091 4 C -0.163 4.163 5 C -0.118 4.118 6 H 0.099 0.901 7 C 0.040 3.960 8 N -0.389 5.389 9 C -0.463 4.463 10 H 0.082 0.918 11 C -0.244 4.244 12 N -0.590 5.590 13 Si 0.912 3.088 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.223 1.223 17 C -0.081 4.081 18 H 0.083 0.917 19 H 0.087 0.913 20 H 0.044 0.956 21 H 0.058 0.942 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.201 0.799 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.923 8.629 -5.791 11.499 hybrid contribution -0.821 1.575 -0.506 1.847 sum -5.744 10.204 -6.297 13.296 Atomic orbital electron populations 1.22484 0.88365 1.02100 1.00220 1.64734 1.07700 1.14694 1.38067 1.22836 0.96045 0.90004 1.00214 1.22401 0.97201 0.97382 0.99309 1.22285 0.96190 0.95115 0.98211 0.90080 1.20604 0.96867 0.87973 0.90582 1.42371 1.81071 1.01119 1.14359 1.20046 1.41080 0.94462 0.90739 0.91847 1.25790 1.01247 0.91175 1.06182 1.70877 1.48182 1.32619 1.07311 0.83234 0.75628 0.75984 0.73998 1.20997 1.22279 1.22324 1.23281 0.94797 0.99987 0.89990 0.91741 0.91319 0.95599 0.94159 0.90748 0.91374 0.91131 0.96438 0.96126 0.79938 0.93390 0.89881 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.40 60.07 0.56 0.78 16 2 N -0.53 -7.89 5.55 -238.55 -1.32 -9.21 16 3 C 0.04 0.49 6.70 -2.76 -0.02 0.47 16 4 C -0.12 -1.74 6.51 -25.38 -0.17 -1.91 16 5 C -0.10 -1.72 3.09 -88.76 -0.27 -1.99 16 6 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 7 C 0.17 3.56 5.57 -4.05 -0.02 3.54 16 8 N -0.74 -19.49 5.48 -59.91 -0.33 -19.82 16 9 C -0.33 -9.71 9.99 -15.06 -0.15 -9.86 16 10 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 11 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 12 N -0.94 -29.85 13.70 55.49 0.76 -29.09 16 13 Si 1.08 26.43 29.92 -169.99 -5.09 21.35 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.05 0.80 5.84 -1.79 -0.01 0.79 16 18 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 20 H 0.03 0.31 8.01 -51.93 -0.42 -0.10 16 21 H 0.04 0.49 7.73 -51.93 -0.40 0.09 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.37 9.80 6.43 -40.82 -0.26 9.53 16 28 H 0.25 7.95 6.77 -40.82 -0.28 7.67 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.05 0.83 7.81 -51.92 -0.41 0.42 16 LS Contribution 246.04 15.07 3.71 3.71 Total: -1.00 -31.86 246.04 -7.19 -39.05 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.75 Total: 3.68 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.17 Total: -9.68 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.89 Total: -58.12 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -5.09 Total: 21.35 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.86 -7.19 -39.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485099.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.946 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds