Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47897 * 111.00118 * 2 1 4 4 C 1.53991 * 107.05971 * 145.84491 * 3 2 1 5 5 C 1.54595 * 105.13863 * 358.77372 * 4 3 2 6 6 H 1.09001 * 110.72425 * 96.57980 * 5 4 3 7 7 C 1.53001 * 110.72613 * 219.68656 * 5 4 3 8 8 N 1.46490 * 109.47264 * 182.54767 * 7 5 4 9 9 C 1.36935 * 120.00121 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00139 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00401 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99569 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00172 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.46653 * 299.99639 * 13 11 9 16 16 H 1.48495 * 109.47483 * 60.00002 * 13 11 9 17 17 C 1.48725 * 111.04124 * 117.57834 * 2 1 3 18 18 H 1.09004 * 109.47379 * 59.87468 * 1 2 3 19 19 H 1.08996 * 109.47384 * 179.87050 * 1 2 3 20 20 H 1.08999 * 109.47499 * 299.87814 * 1 2 3 21 21 H 1.09002 * 109.91634 * 26.48594 * 3 2 1 22 22 H 1.08997 * 110.08338 * 265.29217 * 3 2 1 23 23 H 1.09007 * 110.30832 * 239.85812 * 4 3 2 24 24 H 1.08993 * 110.30978 * 117.69268 * 4 3 2 25 25 H 1.09003 * 109.46836 * 62.54474 * 7 5 4 26 26 H 1.08999 * 109.47071 * 302.55514 * 7 5 4 27 27 H 0.97000 * 120.00577 * 0.02562 * 8 7 5 28 28 H 0.97001 * 119.99885 * 359.97438 * 12 11 9 29 29 H 1.08996 * 110.84049 * 81.95859 * 17 2 1 30 30 H 1.09007 * 110.58724 * 318.76842 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0930 1.3154 6 1 4.1140 -0.6533 0.6580 7 6 3.9588 -0.1308 2.7575 8 7 4.1494 -1.5229 3.1717 9 6 4.6034 -1.8062 4.4322 10 1 4.8206 -1.0034 5.1210 11 6 4.7845 -3.1254 4.8245 12 7 4.5203 -4.1039 3.9848 13 14 5.4032 -3.5118 6.5442 14 1 5.5110 -4.9833 6.7125 15 1 6.7387 -2.8926 6.7405 16 1 4.4527 -2.9668 7.5465 17 6 2.0030 -0.6426 1.2304 18 1 -0.3634 0.5158 -0.8889 19 1 -0.3634 -1.0276 -0.0023 20 1 -0.3634 0.5119 0.8910 21 1 1.2758 2.0561 0.4570 22 1 2.2116 1.7000 -1.0202 23 1 3.2136 2.0429 1.6766 24 1 4.1469 1.6454 0.2024 25 1 3.2305 0.3469 3.4129 26 1 4.9083 0.4006 2.8213 27 1 3.9547 -2.2441 2.5530 28 1 4.1987 -3.9032 3.0919 29 1 2.0092 -1.7279 1.1296 30 1 1.4243 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037485099.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -13.228621 kcal Electronic energy + Delta-G solvation = -11331.782111 eV Core-core repulsion = 9353.970788 eV Total energy + Delta-G solvation = -1977.811324 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.10632 -36.92615 -34.24672 -32.10426 -29.85595 -27.48486 -25.81218 -24.20003 -21.96218 -21.28244 -19.34483 -17.31124 -16.97434 -15.79624 -15.72348 -15.59698 -15.09845 -14.80061 -14.24391 -13.73515 -13.08281 -12.79489 -12.64441 -12.47714 -12.35582 -12.20709 -11.86747 -11.82590 -11.55076 -11.22883 -10.94880 -9.47344 -9.14376 -8.43097 -5.36861 1.57440 1.68012 1.84706 2.70109 3.00419 3.36817 3.53589 3.66221 3.88499 4.04635 4.23316 4.41401 4.46959 4.50260 4.56190 4.71444 4.73225 4.85505 4.91828 4.92610 5.05992 5.17906 5.31920 5.55087 5.81343 6.04541 6.46486 7.06565 7.96958 8.08543 9.08923 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.075117 B = 0.008572 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.661888 B = 3265.482027 C = 3467.040923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.538 5.538 3 C 0.038 3.962 4 C -0.117 4.117 5 C -0.094 4.094 6 H 0.069 0.931 7 C 0.168 3.832 8 N -0.757 5.757 9 C -0.341 4.341 10 H 0.066 0.934 11 C -0.105 4.105 12 N -0.973 5.973 13 Si 1.131 2.869 14 H -0.291 1.291 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.052 3.948 18 H 0.087 0.913 19 H 0.065 0.935 20 H 0.028 0.972 21 H 0.054 0.946 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.017 0.983 26 H 0.022 0.978 27 H 0.361 0.639 28 H 0.243 0.757 29 H 0.060 0.940 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 11.489 -6.594 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.263 5.263 3 C -0.090 4.090 4 C -0.156 4.156 5 C -0.114 4.114 6 H 0.088 0.912 7 C 0.042 3.958 8 N -0.402 5.402 9 C -0.472 4.472 10 H 0.084 0.916 11 C -0.296 4.296 12 N -0.621 5.621 13 Si 0.954 3.046 14 H -0.217 1.217 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.076 4.076 18 H 0.106 0.894 19 H 0.084 0.916 20 H 0.047 0.953 21 H 0.073 0.927 22 H 0.112 0.888 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.193 0.807 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.135 10.218 -5.878 12.858 hybrid contribution -0.788 1.162 -0.538 1.503 sum -5.923 11.380 -6.415 14.344 Atomic orbital electron populations 1.22562 0.86834 1.02435 1.01460 1.64724 1.09280 1.15922 1.36326 1.22925 0.95601 0.89120 1.01305 1.22398 0.98608 0.94596 0.99982 1.22156 0.95898 0.97832 0.95480 0.91230 1.20736 0.96851 0.85312 0.92945 1.42596 1.80976 1.03019 1.13575 1.20433 1.40144 0.94724 0.91900 0.91555 1.27325 1.01485 0.91359 1.09405 1.70992 1.50267 1.33463 1.07374 0.82607 0.76334 0.75527 0.70090 1.21690 1.20227 1.20298 1.23084 0.94726 0.98926 0.90845 0.89402 0.91606 0.95315 0.92733 0.88806 0.90640 0.89469 0.96499 0.96039 0.80703 0.94635 0.92120 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.40 127.69 1.20 1.56 16 2 N -0.54 -15.17 5.55 -908.63 -5.04 -20.21 16 3 C 0.04 0.88 6.70 86.45 0.58 1.46 16 4 C -0.12 -3.01 6.51 31.47 0.20 -2.81 16 5 C -0.09 -3.23 3.09 -9.59 -0.03 -3.26 16 6 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 7 C 0.17 7.10 5.57 86.38 0.48 7.59 16 8 N -0.76 -40.23 5.48 -343.47 -1.88 -42.11 16 9 C -0.34 -19.97 9.99 84.03 0.84 -19.13 16 10 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 11 C -0.10 -6.25 5.50 84.86 0.47 -5.79 16 12 N -0.97 -62.50 13.70 21.65 0.30 -62.20 16 13 Si 1.13 52.83 29.92 68.60 2.05 54.88 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.05 1.78 5.84 86.61 0.51 2.28 16 18 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 19 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.03 0.64 8.01 -2.39 -0.02 0.62 16 21 H 0.05 1.13 7.73 -2.39 -0.02 1.11 16 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 1.84 7.85 -2.38 -0.02 1.82 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.02 0.73 8.05 -2.39 -0.02 0.71 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.36 19.85 6.43 -92.71 -0.60 19.26 16 28 H 0.24 15.63 6.77 -92.71 -0.63 15.01 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.29 7.81 -2.38 -0.02 1.27 16 Total: -1.00 -67.55 246.04 0.32 -67.23 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.64 Total: 20.50 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.25 Total: -18.09 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -6.62 Total: -124.52 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.05 Total: 54.88 kcal Total: -67.55 0.32 -67.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485099.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.001 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds