Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47097 * 2 1 4 4 C 1.50693 * 109.47244 * 239.99832 * 2 1 3 5 5 H 1.07999 * 120.00359 * 245.55994 * 4 2 1 6 6 C 1.37878 * 119.99658 * 65.55225 * 4 2 1 7 7 N 1.31511 * 120.00254 * 8.56068 * 6 4 2 8 8 Si 1.86798 * 119.99759 * 188.55591 * 6 4 2 9 9 H 1.48504 * 109.47321 * 84.99748 * 8 6 4 10 10 H 1.48496 * 109.47501 * 204.99752 * 8 6 4 11 11 H 1.48500 * 109.47563 * 324.99848 * 8 6 4 12 12 N 1.46904 * 109.46995 * 119.99592 * 2 1 3 13 13 C 1.46955 * 111.00395 * 295.00097 * 12 2 1 14 14 C 1.53044 * 109.36727 * 176.80988 * 13 12 2 15 15 N 1.46957 * 109.36397 * 58.40099 * 14 13 12 16 16 C 1.46960 * 110.88215 * 300.67982 * 15 14 13 17 17 C 1.46958 * 110.99648 * 171.19851 * 12 2 1 18 18 H 1.08994 * 109.47023 * 64.95464 * 1 2 3 19 19 H 1.08998 * 109.47619 * 184.96180 * 1 2 3 20 20 H 1.09010 * 109.46913 * 304.96020 * 1 2 3 21 21 H 0.97006 * 119.99717 * 180.02562 * 7 6 4 22 22 H 1.09005 * 109.48708 * 56.83854 * 13 12 2 23 23 H 1.09005 * 109.48834 * 296.78318 * 13 12 2 24 24 H 1.09002 * 109.49020 * 298.43330 * 14 13 12 25 25 H 1.09002 * 109.49209 * 178.36767 * 14 13 12 26 26 H 1.00901 * 111.00334 * 64.54688 * 15 14 13 27 27 H 1.08998 * 109.49258 * 179.28506 * 16 15 14 28 28 H 1.09000 * 109.49117 * 299.35566 * 16 15 14 29 29 H 1.08994 * 109.49063 * 303.15617 * 17 12 2 30 30 H 1.09001 * 109.48509 * 63.20581 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5772 -1.6379 -1.1339 6 6 1.7962 -0.1764 -2.4794 7 7 1.2843 1.0297 -2.5929 8 14 2.2036 -1.1659 -4.0105 9 1 1.0670 -2.0644 -4.3362 10 1 2.4456 -0.2418 -5.1474 11 1 3.4222 -1.9784 -3.7651 12 7 2.0197 -0.6924 1.1995 13 6 1.6486 0.0395 2.4186 14 6 2.1062 -0.7528 3.6454 15 7 3.5600 -0.9569 3.5791 16 6 3.9312 -1.6889 2.3601 17 6 3.4735 -0.8965 1.1331 18 1 -0.3633 0.4350 -0.9310 19 1 -0.3634 -1.0238 0.0889 20 1 -0.3633 0.5889 0.8423 21 1 1.1178 1.4052 -3.4717 22 1 0.5665 0.1671 2.4509 23 1 2.1304 1.0173 2.4166 24 1 1.6036 -1.7199 3.6620 25 1 1.8578 -0.1979 4.5502 26 1 4.0517 -0.0776 3.6367 27 1 5.0132 -1.8164 2.3276 28 1 3.4493 -2.6666 2.3620 29 1 3.7219 -1.4514 0.2285 30 1 3.9760 0.0706 1.1162 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037996056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = -17.972460 kcal Electronic energy + Delta-G solvation = -11798.499468 eV Core-core repulsion = 9820.482436 eV Total energy + Delta-G solvation = -1978.017032 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.07950 -36.44109 -34.09183 -31.89998 -30.73528 -27.37086 -25.90678 -23.94662 -22.18473 -21.14303 -18.39629 -17.48054 -16.45353 -15.74568 -15.68076 -15.32005 -15.19905 -14.59674 -14.16993 -13.38248 -13.26848 -12.83071 -12.58439 -12.52462 -12.33123 -12.21356 -12.03118 -11.88161 -11.73678 -10.84153 -10.59197 -9.40211 -8.96974 -8.19289 -6.28119 1.39365 1.41321 1.50179 2.38885 3.11549 3.20838 3.44841 4.18577 4.27802 4.33134 4.41203 4.43854 4.68212 4.76241 4.83105 4.94723 4.97647 5.07787 5.15765 5.24789 5.40476 5.65392 5.69364 5.99357 6.13842 6.28682 6.47248 6.69580 6.87311 7.40622 8.89872 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.059267 B = 0.012294 C = 0.010802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.327048 B = 2276.907787 C = 2591.576386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.040 1.040 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.536 5.536 13 C 0.013 3.987 14 C 0.070 3.930 15 N -0.683 5.683 16 C 0.069 3.931 17 C 0.030 3.970 18 H 0.042 0.958 19 H 0.040 0.960 20 H 0.031 0.969 21 H 0.262 0.738 22 H 0.074 0.926 23 H 0.009 0.991 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.341 0.659 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -3.182 8.509 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.022 1.022 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.262 5.262 13 C -0.117 4.117 14 C -0.060 4.060 15 N -0.311 5.311 16 C -0.061 4.061 17 C -0.100 4.100 18 H 0.061 0.939 19 H 0.059 0.941 20 H 0.050 0.950 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.028 0.972 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.158 0.842 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 2.410 -4.089 8.814 10.011 hybrid contribution 0.210 1.534 -1.976 2.511 sum 2.619 -2.556 6.838 7.756 Atomic orbital electron populations 1.21533 0.97239 0.99130 0.99079 1.19075 0.92602 0.90267 0.87487 1.02239 1.21406 1.35730 1.07963 0.91118 0.92079 1.25750 0.95273 0.95544 1.02103 1.70093 1.45801 1.15833 1.24494 0.85550 0.78879 0.78512 0.78610 1.19888 1.21061 1.19102 1.62215 1.12597 1.49022 1.02321 1.22921 1.01355 0.94821 0.92561 1.22080 0.88158 1.00334 0.95478 1.60875 1.06872 1.25633 1.37717 1.22089 1.00928 0.97282 0.85846 1.22693 0.88306 0.98153 1.00866 0.93941 0.94088 0.95002 0.92876 0.90748 0.97227 0.90541 0.88273 0.84232 0.88809 0.90666 0.91210 0.97824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 8.85 71.98 0.64 -4.86 16 2 C 0.21 11.13 1.93 44.17 0.09 11.22 16 3 H -0.04 -2.39 8.08 -2.38 -0.02 -2.41 16 4 C -0.52 -29.24 7.68 25.60 0.20 -29.04 16 5 H 0.06 3.37 6.31 -2.91 -0.02 3.35 16 6 C 0.01 0.69 5.18 84.66 0.44 1.12 16 7 N -0.92 -54.35 12.12 21.45 0.26 -54.09 16 8 Si 0.96 43.95 29.55 68.60 2.03 45.98 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 N -0.54 -23.34 4.57 -874.85 -4.00 -27.34 16 13 C 0.01 0.48 5.39 86.31 0.47 0.95 16 14 C 0.07 1.96 6.72 86.31 0.58 2.54 16 15 N -0.68 -18.96 6.91 -513.42 -3.55 -22.50 16 16 C 0.07 2.09 6.72 86.31 0.58 2.67 16 17 C 0.03 1.18 5.26 86.31 0.45 1.64 16 18 H 0.04 2.28 6.77 -2.39 -0.02 2.27 16 19 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 20 H 0.03 1.38 6.70 -2.38 -0.02 1.37 16 21 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 22 H 0.07 2.65 6.40 -2.38 -0.02 2.64 16 23 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.34 8.78 8.89 -89.69 -0.80 7.98 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 3.06 5.96 -2.39 -0.01 3.04 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -61.29 236.62 -1.50 -62.79 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.32 Total: 8.94 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 3.44 Total: -13.77 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -7.29 Total: -103.94 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -61.29 -1.50 -62.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037996056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.818 kcal (2) G-P(sol) polarization free energy of solvation -61.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds