Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.47449 * 110.99823 * 69.87534 * 10 9 7 12 12 C 1.54322 * 107.22902 * 123.25596 * 11 10 9 13 13 C 1.55133 * 103.02063 * 22.28050 * 12 11 10 14 14 C 1.47847 * 110.99721 * 190.71605 * 10 9 7 15 15 H 1.09005 * 110.37490 * 332.46574 * 14 10 9 16 16 C 1.53003 * 110.37189 * 94.80848 * 14 10 9 17 17 N 1.46897 * 109.46898 * 304.99951 * 16 14 10 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 20 20 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 21 21 H 1.08994 * 109.88528 * 242.65460 * 11 10 9 22 22 H 1.08999 * 109.88972 * 3.68801 * 11 10 9 23 23 H 1.09002 * 110.70479 * 140.66530 * 12 11 10 24 24 H 1.09002 * 110.70375 * 263.89964 * 12 11 10 25 25 H 1.09004 * 110.98852 * 82.43953 * 13 12 11 26 26 H 1.09000 * 110.99396 * 206.21442 * 13 12 11 27 27 H 1.08998 * 109.47169 * 65.00092 * 16 14 10 28 28 H 1.09003 * 109.46870 * 185.00391 * 16 14 10 29 29 H 1.00899 * 110.99752 * 180.02562 * 17 16 14 30 30 H 1.00896 * 111.00286 * 303.95045 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9091 -3.7095 1.2920 12 6 2.6623 -5.1290 1.8448 13 6 2.3086 -5.9429 0.5724 14 6 1.5193 -4.8997 -0.2572 15 1 0.4841 -4.8508 0.0807 16 6 1.5791 -5.2474 -1.7460 17 7 1.0282 -4.1347 -2.5311 18 1 -0.4849 -0.8401 0.0004 19 1 0.6248 -2.5571 0.8897 20 1 0.6241 -2.5567 -0.8903 21 1 3.9772 -3.5493 1.1453 22 1 2.5142 -2.9656 1.9839 23 1 3.5638 -5.5215 2.3153 24 1 1.8284 -5.1295 2.5468 25 1 3.2103 -6.2581 0.0473 26 1 1.6829 -6.8008 0.8190 27 1 2.6151 -5.4199 -2.0375 28 1 0.9943 -6.1482 -1.9325 29 1 1.0562 -4.3403 -3.5185 30 1 0.0896 -3.9129 -2.2348 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038246815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -1.441113 kcal Electronic energy + Delta-G solvation = -11691.007231 eV Core-core repulsion = 9713.707052 eV Total energy + Delta-G solvation = -1977.300179 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.49162 -33.80210 -33.22139 -30.61116 -28.48707 -25.65237 -23.68184 -22.04018 -20.47200 -19.34481 -16.56213 -15.67598 -15.42099 -14.22007 -14.01030 -13.60361 -13.38742 -12.79301 -12.46648 -12.19568 -11.50778 -10.94425 -10.82074 -10.66836 -10.61737 -10.43488 -10.37341 -10.00587 -9.87400 -8.50678 -8.24244 -7.97409 -7.10681 -6.21349 -3.86618 3.51652 3.57082 3.72873 4.63236 4.78884 4.97846 5.11779 5.38270 5.46268 5.55660 5.71923 5.77939 5.90141 5.99093 6.12622 6.16952 6.26254 6.56073 6.68544 6.75601 7.19252 7.28901 7.63318 7.92935 8.05539 8.25006 8.49950 8.78257 9.05769 9.82295 11.18019 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.046537 B = 0.012528 C = 0.010841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.533404 B = 2234.392406 C = 2582.227790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 1.073 2.927 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.182 3.818 10 N -0.500 5.500 11 C 0.051 3.949 12 C -0.143 4.143 13 C -0.122 4.122 14 C 0.067 3.933 15 H 0.038 0.962 16 C 0.086 3.914 17 N -0.828 5.828 18 H 0.265 0.735 19 H -0.032 1.032 20 H 0.039 0.961 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.012 0.988 29 H 0.329 0.671 30 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -10.534 -0.139 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.192 4.192 3 Si 0.902 3.098 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.612 4.612 8 H 0.071 0.929 9 C 0.056 3.944 10 N -0.224 5.224 11 C -0.077 4.077 12 C -0.182 4.182 13 C -0.161 4.161 14 C -0.043 4.043 15 H 0.056 0.944 16 C -0.045 4.045 17 N -0.358 5.358 18 H 0.075 0.925 19 H -0.015 1.015 20 H 0.057 0.943 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.141 0.859 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.565 -8.337 -0.238 9.070 hybrid contribution -1.158 -2.515 0.380 2.795 sum 2.407 -10.852 0.142 11.116 Atomic orbital electron populations 1.70764 1.06848 1.30141 1.48159 1.25769 0.96542 1.02514 0.94376 0.83483 0.74737 0.75107 0.76430 1.21813 1.21198 1.21484 1.21991 0.94693 0.91111 1.53445 0.92900 1.20048 0.90768 0.88944 0.94633 1.63419 1.28625 1.01549 1.28797 1.22685 0.99599 0.94233 0.91213 1.22827 1.00854 0.97266 0.97225 1.22679 1.00009 0.97076 0.96291 1.22569 0.96099 0.91381 0.94253 0.94354 1.21684 0.99414 0.90197 0.93249 1.58559 1.28126 1.42503 1.06570 0.92533 1.01466 0.94297 0.92016 0.92509 0.91618 0.92256 0.91016 0.91975 0.91140 0.97005 0.85906 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.88 13.65 55.43 0.76 -28.13 16 2 C 0.01 0.31 5.46 -17.82 -0.10 0.21 16 3 Si 1.07 26.48 29.90 -169.99 -5.08 21.40 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.57 -17.03 8.66 -34.44 -0.30 -17.33 16 8 H 0.05 1.60 7.78 -52.48 -0.41 1.19 16 9 C 0.18 4.89 3.43 -4.97 -0.02 4.87 16 10 N -0.50 -11.35 4.67 -224.80 -1.05 -12.40 16 11 C 0.05 1.05 6.39 -2.83 -0.02 1.03 16 12 C -0.14 -2.30 6.94 -24.91 -0.17 -2.47 16 13 C -0.12 -1.85 6.49 -24.60 -0.16 -2.01 16 14 C 0.07 1.23 2.74 -66.19 -0.18 1.05 16 15 H 0.04 0.75 7.81 -51.93 -0.41 0.34 16 16 C 0.09 1.42 6.57 -3.82 -0.03 1.40 16 17 N -0.83 -14.75 8.18 -10.37 -0.08 -14.84 16 18 H 0.26 8.26 7.22 -40.82 -0.29 7.97 16 19 H -0.03 -0.92 7.83 -51.93 -0.41 -1.33 16 20 H 0.04 1.07 5.71 -51.93 -0.30 0.78 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 22 H 0.06 1.29 7.31 -51.93 -0.38 0.91 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.17 8.03 -51.93 -0.42 0.76 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.33 4.88 9.08 -39.29 -0.36 4.52 16 30 H 0.34 6.01 8.01 -39.29 -0.31 5.70 16 LS Contribution 241.87 15.07 3.64 3.64 Total: -1.00 -32.33 241.87 -7.39 -39.72 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.60 Total: 3.86 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -0.97 Total: -13.25 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.38 Total: -55.36 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.08 Total: 21.40 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.33 -7.39 -39.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038246815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.274 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds