Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47226 * 300.00541 * 3 2 1 6 6 H 1.48497 * 109.46889 * 60.00418 * 3 2 1 7 7 C 1.38805 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00058 * 192.48559 * 7 2 1 9 9 N 1.36940 * 119.99670 * 12.48041 * 7 2 1 10 10 C 1.46920 * 120.62972 * 31.67606 * 9 7 2 11 11 C 1.53195 * 108.77775 * 126.40945 * 10 9 7 12 12 C 1.53041 * 109.31139 * 54.63252 * 11 10 9 13 13 C 1.53042 * 109.53953 * 298.63618 * 12 11 10 14 14 C 1.46930 * 120.62898 * 211.68908 * 9 7 2 15 15 H 1.08996 * 109.58216 * 113.65954 * 14 9 7 16 16 C 1.53002 * 109.58912 * 353.37965 * 14 9 7 17 17 N 1.46906 * 109.46764 * 59.35478 * 16 14 9 18 18 H 0.97004 * 119.99862 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.58789 * 246.19438 * 10 9 7 20 20 H 1.08994 * 109.59260 * 6.47926 * 10 9 7 21 21 H 1.09002 * 109.49670 * 174.57789 * 11 10 9 22 22 H 1.08997 * 109.49727 * 294.65196 * 11 10 9 23 23 H 1.09002 * 109.46048 * 58.65628 * 12 11 10 24 24 H 1.09001 * 109.46176 * 178.62787 * 12 11 10 25 25 H 1.08995 * 109.49789 * 301.41539 * 13 12 11 26 26 H 1.09005 * 109.49965 * 181.31561 * 13 12 11 27 27 H 1.08998 * 109.47152 * 179.35241 * 16 14 9 28 28 H 1.08999 * 109.47018 * 299.35674 * 16 14 9 29 29 H 1.00900 * 111.00140 * 56.05220 * 17 16 14 30 30 H 1.00900 * 110.99347 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0712 -1.2132 0.2017 9 7 1.3499 -2.3739 -0.2574 10 6 0.1924 -2.3980 -1.1619 11 6 0.4334 -3.4562 -2.2431 12 6 0.7388 -4.7998 -1.5771 13 6 2.0084 -4.6752 -0.7316 14 6 1.7852 -3.6308 0.3667 15 1 1.0175 -3.9812 1.0565 16 6 3.0921 -3.3998 1.1280 17 7 2.8833 -2.3745 2.1592 18 1 -0.4850 0.8401 0.0004 19 1 -0.7064 -2.6493 -0.5986 20 1 0.0708 -1.4194 -1.6262 21 1 -0.4577 -3.5519 -2.8635 22 1 1.2782 -3.1567 -2.8633 23 1 -0.0964 -5.0865 -0.9380 24 1 0.8867 -5.5600 -2.3441 25 1 2.8387 -4.3645 -1.3657 26 1 2.2383 -5.6385 -0.2763 27 1 3.4072 -4.3306 1.5996 28 1 3.8628 -3.0652 0.4337 29 1 2.1290 -2.6321 2.7778 30 1 3.7328 -2.2035 2.6761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044559144.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = 19.822389 kcal Electronic energy + Delta-G solvation = -12056.768408 eV Core-core repulsion = 10080.390283 eV Total energy + Delta-G solvation = -1976.378124 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.76729 -33.79175 -32.74634 -29.78244 -29.49630 -25.29028 -23.65444 -21.89153 -20.25592 -18.96376 -16.25250 -15.44825 -14.52948 -13.83740 -13.74181 -13.54366 -13.18371 -12.69877 -12.20163 -11.84307 -11.34012 -11.03369 -10.69713 -10.52647 -10.26757 -10.07885 -9.95584 -9.73977 -9.33424 -9.13685 -8.24502 -7.52811 -6.27985 -5.44765 -2.86821 3.55656 3.62462 3.64883 4.75450 5.28967 5.43311 5.66337 5.74249 5.76752 5.91313 6.06731 6.17652 6.27977 6.43011 6.46367 6.51529 6.67109 6.84276 6.87080 6.99352 7.17711 7.55984 7.85208 8.02536 8.20698 8.30980 8.78056 9.55112 10.14458 10.71043 11.66116 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.017814 C = 0.013738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.150959 B = 1571.388086 C = 2037.675180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.899 3.101 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.188 4.188 8 H 0.075 0.925 9 N -0.581 5.581 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.170 3.830 15 H 0.018 0.982 16 C 0.078 3.922 17 N -0.812 5.812 18 H 0.245 0.755 19 H 0.013 0.987 20 H 0.086 0.914 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.004 0.996 28 H 0.067 0.933 29 H 0.332 0.668 30 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 -7.680 -0.151 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.732 3.268 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.318 4.318 8 H 0.093 0.907 9 N -0.304 5.304 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.169 4.169 14 C 0.063 3.937 15 H 0.035 0.965 16 C -0.053 4.053 17 N -0.340 5.340 18 H 0.055 0.945 19 H 0.031 0.969 20 H 0.104 0.896 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.301 -7.041 -0.747 7.812 hybrid contribution 0.553 0.104 0.771 0.955 sum 3.854 -6.936 0.024 7.935 Atomic orbital electron populations 1.70010 1.05095 1.24331 1.57563 1.25021 0.95157 0.97868 1.02504 0.86238 0.79173 0.84855 0.76569 1.20709 1.22572 1.22397 1.19199 0.91665 0.82897 1.38030 0.90716 1.44096 1.34340 1.02793 1.49181 1.20751 0.88464 0.97170 0.88935 1.22206 0.99746 0.96710 0.99640 1.21366 0.97613 0.97375 0.98170 1.22002 0.97878 0.98214 0.98810 1.20499 0.93334 0.88309 0.91585 0.96451 1.21726 0.98346 0.90824 0.94392 1.58692 1.08997 1.48228 1.18083 0.94516 0.96873 0.89566 0.93681 0.92900 0.93083 0.94009 0.92377 0.93692 0.97795 0.91487 0.85618 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.84 11.18 55.49 0.62 -27.22 16 2 C -0.01 -0.30 5.00 -17.43 -0.09 -0.39 16 3 Si 0.90 22.96 29.57 -169.99 -5.03 17.94 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 7 C -0.19 -5.15 7.51 -15.06 -0.11 -5.26 16 8 H 0.08 2.05 5.88 -52.49 -0.31 1.74 16 9 N -0.58 -14.66 2.98 -164.78 -0.49 -15.15 16 10 C 0.17 4.28 5.26 -3.71 -0.02 4.26 16 11 C -0.14 -2.89 6.08 -26.61 -0.16 -3.05 16 12 C -0.11 -1.92 5.88 -26.69 -0.16 -2.07 16 13 C -0.13 -2.34 5.37 -26.61 -0.14 -2.48 16 14 C 0.17 3.60 3.13 -67.60 -0.21 3.38 16 15 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 16 C 0.08 1.48 5.54 -3.82 -0.02 1.46 16 17 N -0.81 -15.81 7.20 -10.36 -0.07 -15.88 16 18 H 0.24 7.24 8.31 -40.82 -0.34 6.90 16 19 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 20 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 29 H 0.33 6.28 8.99 -39.29 -0.35 5.93 16 30 H 0.32 5.26 9.08 -39.29 -0.36 4.91 16 LS Contribution 235.22 15.07 3.54 3.54 Total: -1.00 -30.37 235.22 -7.01 -37.38 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.67 Total: 3.54 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.91 Total: -4.15 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.05 Total: -58.25 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.94 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.37 -7.01 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559144.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.200 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds