Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47226 * 300.00541 * 3 2 1 6 6 H 1.48497 * 109.46889 * 60.00418 * 3 2 1 7 7 C 1.38805 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00058 * 192.48559 * 7 2 1 9 9 N 1.36940 * 119.99670 * 12.48041 * 7 2 1 10 10 C 1.46920 * 120.62972 * 31.67606 * 9 7 2 11 11 C 1.53195 * 108.77775 * 126.40945 * 10 9 7 12 12 C 1.53041 * 109.31139 * 54.63252 * 11 10 9 13 13 C 1.53042 * 109.53953 * 298.63618 * 12 11 10 14 14 C 1.46930 * 120.62898 * 211.68908 * 9 7 2 15 15 H 1.08996 * 109.58216 * 113.65954 * 14 9 7 16 16 C 1.53002 * 109.58912 * 353.37965 * 14 9 7 17 17 N 1.46906 * 109.46764 * 59.35478 * 16 14 9 18 18 H 0.97004 * 119.99862 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.58789 * 246.19438 * 10 9 7 20 20 H 1.08994 * 109.59260 * 6.47926 * 10 9 7 21 21 H 1.09002 * 109.49670 * 174.57789 * 11 10 9 22 22 H 1.08997 * 109.49727 * 294.65196 * 11 10 9 23 23 H 1.09002 * 109.46048 * 58.65628 * 12 11 10 24 24 H 1.09001 * 109.46176 * 178.62787 * 12 11 10 25 25 H 1.08995 * 109.49789 * 301.41539 * 13 12 11 26 26 H 1.09005 * 109.49965 * 181.31561 * 13 12 11 27 27 H 1.08998 * 109.47152 * 179.35241 * 16 14 9 28 28 H 1.08999 * 109.47018 * 299.35674 * 16 14 9 29 29 H 1.00900 * 111.00140 * 56.05220 * 17 16 14 30 30 H 1.00900 * 110.99347 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0712 -1.2132 0.2017 9 7 1.3499 -2.3739 -0.2574 10 6 0.1924 -2.3980 -1.1619 11 6 0.4334 -3.4562 -2.2431 12 6 0.7388 -4.7998 -1.5771 13 6 2.0084 -4.6752 -0.7316 14 6 1.7852 -3.6308 0.3667 15 1 1.0175 -3.9812 1.0565 16 6 3.0921 -3.3998 1.1280 17 7 2.8833 -2.3745 2.1592 18 1 -0.4850 0.8401 0.0004 19 1 -0.7064 -2.6493 -0.5986 20 1 0.0708 -1.4194 -1.6262 21 1 -0.4577 -3.5519 -2.8635 22 1 1.2782 -3.1567 -2.8633 23 1 -0.0964 -5.0865 -0.9380 24 1 0.8867 -5.5600 -2.3441 25 1 2.8387 -4.3645 -1.3657 26 1 2.2383 -5.6385 -0.2763 27 1 3.4072 -4.3306 1.5996 28 1 3.8628 -3.0652 0.4337 29 1 2.1290 -2.6321 2.7778 30 1 3.7328 -2.2035 2.6761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044559144.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = -1.478290 kcal Electronic energy + Delta-G solvation = -12057.692074 eV Core-core repulsion = 10080.390283 eV Total energy + Delta-G solvation = -1977.301791 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.47876 -35.35505 -34.70595 -31.68607 -31.18599 -27.20426 -25.35964 -23.68167 -21.89902 -20.68933 -18.20697 -17.27329 -16.20585 -15.73382 -15.48580 -15.10012 -14.77461 -14.49355 -13.97774 -13.49445 -13.05843 -12.80140 -12.63496 -12.41304 -12.08425 -11.88379 -11.69476 -11.50184 -11.07503 -10.89271 -10.35321 -9.10230 -8.30974 -7.59648 -5.03447 1.51319 1.53046 1.62387 2.68877 3.57178 3.67687 3.90954 4.20220 4.25802 4.36598 4.46471 4.69365 4.72295 4.82320 4.90825 5.02717 5.15815 5.21824 5.33026 5.44753 5.51957 5.69459 5.86951 6.01861 6.55772 6.68370 6.90662 7.42538 8.09898 8.61790 9.49012 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.017814 C = 0.013738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.150959 B = 1571.388086 C = 2037.675180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.071 4.071 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.304 1.304 6 H -0.304 1.304 7 C -0.169 4.169 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.161 3.839 15 H 0.006 0.994 16 C 0.083 3.917 17 N -0.836 5.836 18 H 0.236 0.764 19 H -0.013 1.013 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.333 0.667 30 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -9.441 -0.388 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.262 4.262 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.232 1.232 6 H -0.233 1.233 7 C -0.300 4.300 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.024 0.976 16 C -0.048 4.048 17 N -0.366 5.366 18 H 0.045 0.955 19 H 0.005 0.995 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.765 -8.835 -0.982 10.086 hybrid contribution 0.121 0.578 0.872 1.054 sum 4.886 -8.257 -0.110 9.595 Atomic orbital electron populations 1.70179 1.06426 1.24121 1.60115 1.25646 0.95785 1.00672 1.04106 0.85339 0.78730 0.81577 0.75650 1.19332 1.23230 1.23268 1.19405 0.91769 0.83710 1.35142 0.90485 1.44353 1.34032 1.03808 1.49921 1.20559 0.87731 0.96884 0.89818 1.22038 1.00507 0.96556 0.98161 1.21366 0.97476 0.96478 0.98903 1.21919 0.97902 0.98563 0.97734 1.20783 0.93945 0.87207 0.92629 0.97641 1.21672 0.96743 0.92307 0.94080 1.58605 1.10146 1.49066 1.18778 0.95509 0.99540 0.93354 0.91903 0.93157 0.93177 0.90545 0.92479 0.90281 0.94190 0.92319 0.85521 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.59 11.18 21.65 0.24 -59.35 16 2 C -0.07 -4.12 5.00 84.86 0.42 -3.69 16 3 Si 0.95 47.88 29.57 68.60 2.03 49.91 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 7 C -0.17 -9.24 7.51 84.03 0.63 -8.61 16 8 H 0.08 4.15 5.88 -2.91 -0.02 4.13 16 9 N -0.60 -29.96 2.98 -675.24 -2.01 -31.97 16 10 C 0.18 8.83 5.26 86.36 0.45 9.28 16 11 C -0.13 -5.15 6.08 30.67 0.19 -4.96 16 12 C -0.10 -3.37 5.88 30.62 0.18 -3.19 16 13 C -0.12 -3.96 5.37 30.67 0.16 -3.80 16 14 C 0.16 6.47 3.13 44.97 0.14 6.62 16 15 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 16 C 0.08 2.93 5.54 86.30 0.48 3.40 16 17 N -0.84 -31.19 7.20 -186.71 -1.34 -32.53 16 18 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 19 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 20 H 0.05 2.77 6.18 -2.39 -0.01 2.76 16 21 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 2.17 7.47 -2.39 -0.02 2.16 16 29 H 0.33 12.24 8.99 -89.69 -0.81 11.43 16 30 H 0.34 10.42 9.08 -89.69 -0.81 9.60 16 Total: -1.00 -65.49 235.22 1.08 -64.41 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -0.50 Total: 14.48 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 2.66 Total: -4.95 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -3.11 Total: -123.86 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -65.49 1.08 -64.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559144.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.931 kcal (2) G-P(sol) polarization free energy of solvation -65.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds