Wall clock time and date at job start Mon Mar 30 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86792 * 120.00274 * 2 1 4 4 H 1.48502 * 109.47377 * 269.97584 * 3 2 1 5 5 H 1.48504 * 109.47236 * 29.97613 * 3 2 1 6 6 H 1.48492 * 109.47229 * 149.97672 * 3 2 1 7 7 C 1.38812 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00687 * 342.70226 * 7 2 1 9 9 N 1.36938 * 119.99721 * 162.70998 * 7 2 1 10 10 C 1.46922 * 120.63352 * 328.63554 * 9 7 2 11 11 C 1.53194 * 108.77985 * 233.63255 * 10 9 7 12 12 C 1.53035 * 109.31011 * 305.36383 * 11 10 9 13 13 C 1.53046 * 109.53867 * 61.36501 * 12 11 10 14 14 C 1.46929 * 120.63128 * 148.66466 * 9 7 2 15 15 H 1.09006 * 109.57985 * 246.30036 * 14 9 7 16 16 C 1.53004 * 109.58599 * 6.57341 * 14 9 7 17 17 N 1.46897 * 109.47355 * 300.64666 * 16 14 9 18 18 H 0.97001 * 119.99930 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.58696 * 353.42179 * 10 9 7 20 20 H 1.09001 * 109.58749 * 113.84145 * 10 9 7 21 21 H 1.08999 * 109.49533 * 65.31198 * 11 10 9 22 22 H 1.08997 * 109.50168 * 185.38132 * 11 10 9 23 23 H 1.09006 * 109.46044 * 181.38352 * 12 11 10 24 24 H 1.08999 * 109.46487 * 301.35941 * 12 11 10 25 25 H 1.09003 * 109.49408 * 178.68149 * 13 12 11 26 26 H 1.08998 * 109.49664 * 58.58774 * 13 12 11 27 27 H 1.08996 * 109.46905 * 180.63901 * 16 14 9 28 28 H 1.09003 * 109.46608 * 60.64939 * 16 14 9 29 29 H 1.00903 * 110.99925 * 180.02562 * 17 16 14 30 30 H 1.00896 * 110.99784 * 303.95000 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4983 2.0461 -1.4001 5 1 1.4474 2.6528 0.6995 6 1 3.5474 1.4402 0.7005 7 6 2.0101 -1.2022 -0.0005 8 1 1.5068 -2.1165 0.2771 9 7 3.3331 -1.2289 -0.3530 10 6 3.8659 -0.2736 -1.3339 11 6 4.5809 -1.0524 -2.4426 12 6 5.6371 -1.9670 -1.8183 13 6 4.9573 -2.9708 -0.8842 14 6 4.2467 -2.2138 0.2421 15 1 4.9825 -1.7016 0.8621 16 6 3.4504 -3.1993 1.0998 17 7 2.7441 -2.4669 2.1593 18 1 -0.4850 0.8401 0.0004 19 1 3.0474 0.3045 -1.7629 20 1 4.5722 0.3970 -0.8445 21 1 3.8557 -1.6546 -2.9899 22 1 5.0626 -0.3530 -3.1259 23 1 6.1642 -2.5042 -2.6069 24 1 6.3477 -1.3665 -1.2504 25 1 5.7076 -3.6369 -0.4580 26 1 4.2287 -3.5550 -1.4462 27 1 4.1311 -3.9221 1.5493 28 1 2.7263 -3.7222 0.4748 29 1 2.2108 -3.0963 2.7402 30 1 3.3880 -1.9222 2.7132 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044559145.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:53 Heat of formation + Delta-G solvation = 1.691375 kcal Electronic energy + Delta-G solvation = -12114.891697 eV Core-core repulsion = 10137.727353 eV Total energy + Delta-G solvation = -1977.164344 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.72501 -35.45620 -34.70776 -32.39577 -31.38689 -27.21705 -25.28904 -24.19298 -21.89248 -20.88575 -18.29754 -17.45382 -16.52040 -16.09314 -15.23160 -15.14281 -15.08569 -14.69554 -14.25331 -13.61006 -13.38848 -13.07880 -12.82252 -12.43515 -12.13513 -11.86216 -11.60558 -11.54328 -11.15179 -11.04272 -10.47660 -9.14589 -8.53425 -7.86842 -5.18061 1.34312 1.45099 1.52645 2.60807 3.26061 3.48278 3.85850 4.05685 4.14325 4.27346 4.35486 4.54901 4.63991 4.65705 4.75801 4.91205 4.97748 5.07958 5.18568 5.26744 5.31127 5.39374 5.66509 6.16993 6.49766 6.58493 6.88486 7.19160 7.88966 8.26388 9.34312 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.021421 C = 0.015496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.895668 B = 1306.792332 C = 1806.429535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.051 4.051 3 Si 0.933 3.067 4 H -0.288 1.288 5 H -0.325 1.325 6 H -0.272 1.272 7 C -0.158 4.158 8 H 0.075 0.925 9 N -0.613 5.613 10 C 0.117 3.883 11 C -0.130 4.130 12 C -0.105 4.105 13 C -0.124 4.124 14 C 0.164 3.836 15 H 0.028 0.972 16 C 0.082 3.918 17 N -0.838 5.838 18 H 0.249 0.751 19 H 0.043 0.957 20 H 0.021 0.979 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.337 0.663 30 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 -5.661 -0.773 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.242 4.242 3 Si 0.767 3.233 4 H -0.216 1.216 5 H -0.255 1.255 6 H -0.197 1.197 7 C -0.289 4.289 8 H 0.093 0.907 9 N -0.338 5.338 10 C -0.008 4.008 11 C -0.169 4.169 12 C -0.143 4.143 13 C -0.163 4.163 14 C 0.058 3.942 15 H 0.046 0.954 16 C -0.049 4.049 17 N -0.368 5.368 18 H 0.057 0.943 19 H 0.061 0.939 20 H 0.039 0.961 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.406 -5.232 -1.351 13.532 hybrid contribution 0.326 0.726 0.827 1.148 sum 12.732 -4.506 -0.524 13.516 Atomic orbital electron populations 1.69907 1.07023 1.25551 1.60344 1.25750 0.95589 0.99586 1.03268 0.86110 0.78240 0.82395 0.76583 1.21625 1.25511 1.19721 1.18826 0.83816 0.93294 1.32946 0.90718 1.44624 1.06316 1.37398 1.45427 1.21383 0.96168 0.92394 0.90851 1.21928 0.98346 0.99192 0.97385 1.21387 0.96814 0.97175 0.98908 1.21930 0.99391 0.97892 0.97130 1.20846 0.90747 0.89646 0.92935 0.95447 1.21681 0.95657 0.94143 0.93435 1.58603 1.31092 1.29758 1.17371 0.94254 0.93870 0.96128 0.92879 0.90718 0.90131 0.92128 0.89700 0.92803 0.93675 0.93086 0.85041 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 2 C -0.05 -3.12 5.26 84.86 0.45 -2.67 16 3 Si 0.93 49.64 24.33 68.60 1.67 51.31 16 4 H -0.29 -14.73 6.57 99.48 0.65 -14.08 16 5 H -0.32 -17.90 7.11 99.48 0.71 -17.20 16 6 H -0.27 -13.94 6.71 99.48 0.67 -13.27 16 7 C -0.16 -8.89 7.97 84.03 0.67 -8.22 16 8 H 0.08 4.54 6.06 -2.91 -0.02 4.52 16 9 N -0.61 -28.63 2.72 -675.23 -1.84 -30.47 16 10 C 0.12 5.11 4.19 86.36 0.36 5.47 16 11 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 12 C -0.11 -2.91 5.88 30.62 0.18 -2.73 16 13 C -0.12 -3.65 5.37 30.67 0.16 -3.49 16 14 C 0.16 6.05 3.13 44.97 0.14 6.20 16 15 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 16 C 0.08 2.84 5.54 86.31 0.48 3.32 16 17 N -0.84 -31.58 7.19 -186.72 -1.34 -32.93 16 18 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 19 H 0.04 2.13 4.73 -2.38 -0.01 2.12 16 20 H 0.02 0.90 7.03 -2.39 -0.02 0.88 16 21 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.97 7.47 -2.39 -0.02 1.96 16 29 H 0.34 11.06 9.08 -89.69 -0.81 10.25 16 30 H 0.33 11.68 8.99 -89.70 -0.81 10.87 16 Total: -1.00 -68.78 228.84 0.84 -67.94 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -0.58 Total: 14.36 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 2.63 Total: -6.31 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -2.88 Total: -127.29 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.67 Total: 51.31 kcal Total: -68.78 0.84 -67.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559145.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.630 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds