Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47260 * 240.00743 * 3 2 1 5 5 H 1.48504 * 109.46841 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47073 * 120.00103 * 3 2 1 7 7 C 1.37873 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47233 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47351 * 180.02562 * 10 9 7 12 12 C 1.48562 * 110.99842 * 290.12526 * 11 10 9 13 13 C 1.54379 * 104.59486 * 200.96032 * 12 11 10 14 14 C 1.54266 * 105.05973 * 23.85004 * 13 12 11 15 15 H 1.09005 * 110.32054 * 118.89995 * 14 13 12 16 16 N 1.46902 * 110.32255 * 241.10433 * 14 13 12 17 17 C 1.48562 * 111.00142 * 174.70363 * 11 10 9 18 18 H 0.96999 * 120.00333 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47198 * 60.00520 * 9 7 2 20 20 H 1.09002 * 109.47280 * 300.00051 * 9 7 2 21 21 H 1.08998 * 109.47414 * 59.99622 * 10 9 7 22 22 H 1.09002 * 109.46654 * 299.99976 * 10 9 7 23 23 H 1.08998 * 110.41528 * 82.17831 * 12 11 10 24 24 H 1.08997 * 110.50874 * 319.78619 * 12 11 10 25 25 H 1.08996 * 110.32596 * 264.95760 * 13 12 11 26 26 H 1.08997 * 110.32827 * 142.74551 * 13 12 11 27 27 H 1.00903 * 111.00161 * 298.54672 * 16 14 13 28 28 H 1.00901 * 110.99953 * 62.50238 * 16 14 13 29 29 H 1.09000 * 110.41111 * 40.26361 * 17 11 10 30 30 H 1.08989 * 110.41482 * 277.81625 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.8309 -5.1570 1.3008 13 6 0.5853 -6.6802 1.3558 14 6 1.6443 -7.2911 0.4150 15 1 2.3022 -7.9604 0.9695 16 7 0.9929 -8.0117 -0.6870 17 6 2.4407 -6.0858 -0.1292 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8719 -3.6042 -0.8906 23 1 -0.1159 -4.6179 1.3325 24 1 1.4726 -4.8455 2.1250 25 1 -0.4177 -6.9150 0.9998 26 1 0.7235 -7.0496 2.3719 27 1 0.4308 -8.7738 -0.3385 28 1 0.4409 -7.3846 -1.2528 29 1 3.3360 -5.9199 0.4700 30 1 2.7058 -6.2459 -1.1741 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050243800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -7.743478 kcal Electronic energy + Delta-G solvation = -11263.502737 eV Core-core repulsion = 9285.929267 eV Total energy + Delta-G solvation = -1977.573470 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.78741 -34.42370 -32.72207 -30.38613 -28.78846 -26.79137 -24.16423 -21.63807 -20.18700 -19.76690 -16.44464 -16.22723 -15.36027 -14.51129 -14.33930 -13.96062 -13.61803 -12.60239 -12.34514 -12.13771 -11.79143 -11.46245 -11.01260 -10.97148 -10.79617 -10.66809 -10.50301 -9.81877 -9.35947 -9.13295 -8.63227 -8.33018 -7.87917 -5.98705 -4.01406 3.34005 3.38185 3.40673 4.42329 4.58022 4.66547 4.88556 5.00893 5.34071 5.37035 5.57576 5.71045 5.89617 5.99859 6.05837 6.17242 6.29668 6.43291 6.46531 6.96246 7.22814 7.38596 7.47455 7.54970 7.76073 7.89400 8.08463 8.44151 9.05696 9.62210 11.12691 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.092815 B = 0.007934 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.603909 B = 3528.237179 C = 3634.742576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.052 3.948 11 N -0.511 5.511 12 C 0.036 3.964 13 C -0.160 4.160 14 C 0.088 3.912 15 H 0.080 0.920 16 N -0.841 5.841 17 C 0.032 3.968 18 H 0.261 0.739 19 H 0.024 0.976 20 H 0.015 0.985 21 H 0.022 0.978 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.335 0.665 28 H 0.349 0.651 29 H 0.042 0.958 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -12.044 2.047 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.075 4.075 11 N -0.235 5.235 12 C -0.092 4.092 13 C -0.200 4.200 14 C -0.025 4.025 15 H 0.098 0.902 16 N -0.370 5.370 17 C -0.097 4.097 18 H 0.071 0.929 19 H 0.042 0.958 20 H 0.033 0.967 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.147 0.853 28 H 0.163 0.837 29 H 0.060 0.940 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.978 -12.047 1.340 12.282 hybrid contribution 0.141 1.331 1.226 1.815 sum 2.119 -10.716 2.566 11.221 Atomic orbital electron populations 1.69962 1.06039 1.26685 1.50608 1.24995 0.94836 0.99180 0.95284 0.86648 0.79572 0.83114 0.78599 1.20193 1.21251 1.20309 1.21173 0.92957 0.91123 1.50985 0.92847 1.19033 0.93901 0.90064 0.97710 1.22493 0.96935 0.88992 0.99088 1.65496 1.25567 1.02346 1.30138 1.23023 1.00296 0.94480 0.91399 1.23224 0.99757 0.96838 1.00175 1.22180 0.95111 0.94443 0.90733 0.90206 1.58924 1.39932 1.14870 1.23267 1.23186 0.94401 0.90442 1.01650 0.92943 0.95775 0.96703 0.95991 0.92008 0.89996 0.94104 0.91440 0.91711 0.85313 0.83717 0.93993 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.81 5.03 -27.88 -0.14 0.67 16 10 C 0.05 1.14 4.75 -3.83 -0.02 1.12 16 11 N -0.51 -9.57 5.37 -229.98 -1.24 -10.80 16 12 C 0.04 0.62 5.73 -2.18 -0.01 0.61 16 13 C -0.16 -2.10 6.77 -25.35 -0.17 -2.27 16 14 C 0.09 1.14 4.20 -66.33 -0.28 0.86 16 15 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 16 N -0.84 -10.03 9.17 -3.49 -0.03 -10.06 16 17 C 0.03 0.49 6.13 -2.18 -0.01 0.48 16 18 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 19 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.01 0.41 7.26 -51.93 -0.38 0.04 16 21 H 0.02 0.47 7.89 -51.93 -0.41 0.07 16 22 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 23 H 0.08 1.51 7.76 -51.93 -0.40 1.11 16 24 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 25 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.33 3.26 9.06 -39.29 -0.36 2.90 16 28 H 0.35 4.43 8.98 -39.29 -0.35 4.08 16 29 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 30 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 LS Contribution 247.24 15.07 3.73 3.73 Total: -1.00 -30.19 247.24 -7.65 -37.85 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.78 Total: 1.30 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -1.05 Total: -12.37 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.53 Total: -47.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.19 -7.65 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.105 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds