Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47260 * 240.00743 * 3 2 1 5 5 H 1.48504 * 109.46841 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47073 * 120.00103 * 3 2 1 7 7 C 1.37873 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47233 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47351 * 180.02562 * 10 9 7 12 12 C 1.48562 * 110.99842 * 290.12526 * 11 10 9 13 13 C 1.54379 * 104.59486 * 200.96032 * 12 11 10 14 14 C 1.54266 * 105.05973 * 23.85004 * 13 12 11 15 15 H 1.09005 * 110.32054 * 118.89995 * 14 13 12 16 16 N 1.46902 * 110.32255 * 241.10433 * 14 13 12 17 17 C 1.48562 * 111.00142 * 174.70363 * 11 10 9 18 18 H 0.96999 * 120.00333 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47198 * 60.00520 * 9 7 2 20 20 H 1.09002 * 109.47280 * 300.00051 * 9 7 2 21 21 H 1.08998 * 109.47414 * 59.99622 * 10 9 7 22 22 H 1.09002 * 109.46654 * 299.99976 * 10 9 7 23 23 H 1.08998 * 110.41528 * 82.17831 * 12 11 10 24 24 H 1.08997 * 110.50874 * 319.78619 * 12 11 10 25 25 H 1.08996 * 110.32596 * 264.95760 * 13 12 11 26 26 H 1.08997 * 110.32827 * 142.74551 * 13 12 11 27 27 H 1.00903 * 111.00161 * 298.54672 * 16 14 13 28 28 H 1.00901 * 110.99953 * 62.50238 * 16 14 13 29 29 H 1.09000 * 110.41111 * 40.26361 * 17 11 10 30 30 H 1.08989 * 110.41482 * 277.81625 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.8309 -5.1570 1.3008 13 6 0.5853 -6.6802 1.3558 14 6 1.6443 -7.2911 0.4150 15 1 2.3022 -7.9604 0.9695 16 7 0.9929 -8.0117 -0.6870 17 6 2.4407 -6.0858 -0.1292 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8719 -3.6042 -0.8906 23 1 -0.1159 -4.6179 1.3325 24 1 1.4726 -4.8455 2.1250 25 1 -0.4177 -6.9150 0.9998 26 1 0.7235 -7.0496 2.3719 27 1 0.4308 -8.7738 -0.3385 28 1 0.4409 -7.3846 -1.2528 29 1 3.3360 -5.9199 0.4700 30 1 2.7058 -6.2459 -1.1741 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050243800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -31.091083 kcal Electronic energy + Delta-G solvation = -11264.515165 eV Core-core repulsion = 9285.929267 eV Total energy + Delta-G solvation = -1978.585898 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.10033 -36.06763 -34.58150 -31.97329 -30.30493 -28.20860 -26.03772 -23.33550 -21.52546 -21.21092 -18.58154 -17.38521 -16.74608 -16.51398 -15.67006 -15.40913 -15.06821 -14.24550 -14.01446 -13.64528 -13.25737 -13.08273 -12.85899 -12.59181 -12.40892 -12.14783 -11.81882 -11.70647 -11.38198 -11.22534 -10.57116 -9.63206 -9.34615 -8.22106 -6.34413 1.38941 1.42618 1.50611 2.39033 3.10972 3.17242 3.61723 3.67602 3.87254 4.22168 4.38295 4.44422 4.50099 4.61904 4.74916 4.85543 4.93045 5.02131 5.07225 5.16745 5.41593 5.59534 5.75329 5.99687 6.09650 6.25188 6.28945 6.66207 6.82375 7.35030 8.89967 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.092815 B = 0.007934 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.603909 B = 3528.237179 C = 3634.742576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.040 3.960 10 C 0.069 3.931 11 N -0.526 5.526 12 C 0.031 3.969 13 C -0.147 4.147 14 C 0.096 3.904 15 H 0.103 0.897 16 N -0.841 5.841 17 C 0.031 3.969 18 H 0.264 0.736 19 H -0.010 1.010 20 H -0.010 1.010 21 H 0.023 0.977 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.350 0.650 28 H 0.344 0.656 29 H 0.048 0.952 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -12.797 2.405 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.002 3.998 10 C -0.059 4.059 11 N -0.250 5.250 12 C -0.097 4.097 13 C -0.187 4.187 14 C -0.016 4.016 15 H 0.120 0.880 16 N -0.371 5.371 17 C -0.097 4.097 18 H 0.073 0.927 19 H 0.009 0.991 20 H 0.009 0.991 21 H 0.042 0.958 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.164 0.836 28 H 0.157 0.843 29 H 0.067 0.933 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.090 -12.836 1.701 13.312 hybrid contribution -0.246 1.525 1.105 1.899 sum 2.844 -11.311 2.806 11.996 Atomic orbital electron populations 1.70106 1.07893 1.27933 1.51257 1.25997 0.95781 1.03444 0.94470 0.85453 0.78246 0.77803 0.79248 1.19069 1.20666 1.19089 1.21617 0.93556 0.92332 1.51251 0.92143 1.18845 0.94103 0.92007 0.94815 1.22124 0.95573 0.89144 0.99102 1.65382 1.26293 1.02028 1.31334 1.23044 0.98792 0.97408 0.90442 1.23184 1.00310 0.93402 1.01827 1.22140 0.94969 0.93734 0.90777 0.87953 1.58909 1.40311 1.15026 1.22886 1.23254 0.94437 0.90120 1.01918 0.92683 0.99143 0.99137 0.95829 0.91989 0.92498 0.94557 0.90778 0.89331 0.83607 0.84274 0.93348 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.20 5.03 29.85 0.15 2.35 16 10 C 0.07 3.04 4.75 86.30 0.41 3.45 16 11 N -0.53 -19.67 5.37 -881.52 -4.73 -24.40 16 12 C 0.03 1.07 5.73 86.45 0.50 1.57 16 13 C -0.15 -3.54 6.77 31.49 0.21 -3.33 16 14 C 0.10 2.23 4.20 45.81 0.19 2.42 16 15 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 16 N -0.84 -17.94 9.17 -164.95 -1.51 -19.45 16 17 C 0.03 0.91 6.13 86.45 0.53 1.44 16 18 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 19 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 20 H -0.01 -0.58 7.26 -2.39 -0.02 -0.60 16 21 H 0.02 1.02 7.89 -2.39 -0.02 1.00 16 22 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 23 H 0.06 2.18 7.76 -2.39 -0.02 2.16 16 24 H 0.04 1.25 7.83 -2.39 -0.02 1.23 16 25 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.35 5.76 9.06 -89.69 -0.81 4.95 16 28 H 0.34 8.13 8.98 -89.69 -0.81 7.33 16 29 H 0.05 1.37 8.00 -2.39 -0.02 1.35 16 30 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 Total: -1.00 -65.26 247.24 -1.75 -67.01 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -0.50 Total: 11.21 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 2.69 Total: -23.55 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -5.96 Total: -101.52 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.26 -1.75 -67.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.919 kcal (2) G-P(sol) polarization free energy of solvation -65.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds