Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00050 * 2 1 4 4 H 1.48499 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46813 * 120.00591 * 3 2 1 6 6 H 1.48498 * 109.47357 * 240.00327 * 3 2 1 7 7 C 1.37872 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47105 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47047 * 174.85970 * 10 9 7 12 12 C 1.47902 * 110.99916 * 175.70866 * 11 10 9 13 13 C 1.54001 * 107.05507 * 214.15361 * 12 11 10 14 14 C 1.54591 * 105.14018 * 1.22372 * 13 12 11 15 15 H 1.09003 * 110.72509 * 263.41857 * 14 13 12 16 16 N 1.46904 * 110.72331 * 140.31260 * 14 13 12 17 17 C 1.48533 * 111.00226 * 58.30806 * 11 10 9 18 18 H 0.96997 * 120.00299 * 179.97438 * 1 2 3 19 19 H 1.09007 * 109.46666 * 299.99860 * 9 7 2 20 20 H 1.08992 * 109.47215 * 60.00248 * 9 7 2 21 21 H 1.09000 * 109.46604 * 294.85778 * 10 9 7 22 22 H 1.08995 * 109.47406 * 54.85502 * 10 9 7 23 23 H 1.09001 * 109.91565 * 333.50386 * 12 11 10 24 24 H 1.08996 * 109.91992 * 94.79980 * 12 11 10 25 25 H 1.09001 * 110.30510 * 120.14484 * 13 12 11 26 26 H 1.08998 * 110.30571 * 242.20235 * 13 12 11 27 27 H 1.00904 * 110.99379 * 61.45397 * 16 14 13 28 28 H 1.00892 * 110.99854 * 185.40621 * 16 14 13 29 29 H 1.09000 * 110.66816 * 278.15926 * 17 11 10 30 30 H 1.09001 * 110.66481 * 41.28909 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5149 -4.9306 0.1236 12 6 2.4354 -6.0840 0.0243 13 6 1.6671 -7.2155 -0.6835 14 6 0.2763 -6.6208 -1.0029 15 1 -0.4474 -6.8992 -0.2368 16 7 -0.1818 -7.0536 -2.3299 17 6 0.5398 -5.0941 -0.9849 18 1 -0.4850 -0.8400 -0.0004 19 1 0.6247 -2.5570 0.8898 20 1 0.6240 -2.5567 -0.8902 21 1 2.8096 -3.6575 -0.9330 22 1 2.9310 -3.5539 0.8397 23 1 3.3134 -5.8091 -0.5603 24 1 2.7359 -6.4062 1.0213 25 1 2.1769 -7.5010 -1.6036 26 1 1.5693 -8.0771 -0.0230 27 1 -0.2759 -8.0574 -2.3702 28 1 -1.0471 -6.5989 -2.5797 29 1 -0.3791 -4.5476 -0.7726 30 1 0.9734 -4.7674 -1.9300 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050243801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = -35.467965 kcal Electronic energy + Delta-G solvation = -11296.891305 eV Core-core repulsion = 9318.115611 eV Total energy + Delta-G solvation = -1978.775694 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.14081 -36.31549 -34.82921 -32.29965 -29.71310 -28.53575 -25.85685 -23.40254 -21.76315 -21.31344 -18.92251 -17.28522 -16.84974 -16.34089 -15.74108 -15.65498 -14.97714 -14.87136 -14.27035 -13.87527 -13.48672 -13.03814 -12.61033 -12.44062 -12.16067 -12.00072 -11.94665 -11.79379 -11.59876 -10.75939 -10.57157 -9.73176 -9.45268 -8.73308 -6.43717 1.51469 1.60682 1.80263 2.54738 2.94575 3.12908 3.56847 3.64528 3.75556 4.10752 4.25235 4.29331 4.38751 4.58722 4.68968 4.78479 4.83784 4.92365 4.98078 5.14145 5.19054 5.33993 5.79682 5.93005 6.08490 6.14107 6.19774 6.52709 6.57309 7.39257 8.67765 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.076011 B = 0.008414 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.280986 B = 3327.020726 C = 3558.034219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.625 4.625 8 H 0.052 0.948 9 C 0.021 3.979 10 C 0.077 3.923 11 N -0.532 5.532 12 C 0.031 3.969 13 C -0.114 4.114 14 C 0.091 3.909 15 H 0.055 0.945 16 N -0.846 5.846 17 C 0.045 3.955 18 H 0.254 0.746 19 H -0.010 1.010 20 H -0.012 1.012 21 H 0.020 0.980 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.356 0.644 28 H 0.348 0.652 29 H 0.056 0.944 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -13.665 -2.077 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.663 4.663 8 H 0.070 0.930 9 C -0.016 4.016 10 C -0.051 4.051 11 N -0.257 5.257 12 C -0.097 4.097 13 C -0.152 4.152 14 C -0.021 4.021 15 H 0.073 0.927 16 N -0.378 5.378 17 C -0.083 4.083 18 H 0.063 0.937 19 H 0.008 0.992 20 H 0.006 0.994 21 H 0.038 0.962 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.075 0.925 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.722 -11.725 -1.828 12.175 hybrid contribution -0.505 -1.811 -0.249 1.896 sum 2.218 -13.536 -2.077 13.873 Atomic orbital electron populations 1.70912 1.07964 1.29785 1.48519 1.27546 0.96603 1.06976 0.92446 0.82905 0.74116 0.70747 0.78133 1.20655 1.19196 1.19321 1.22464 0.94783 0.93385 1.55645 0.92974 1.19078 0.94839 0.93567 0.94134 1.22019 0.95676 0.88702 0.98684 1.64757 1.15406 1.02353 1.43175 1.22962 0.94772 0.90707 1.01251 1.22415 0.94226 0.97578 1.00973 1.22134 0.96851 0.92637 0.90471 0.92742 1.58637 1.38640 1.13008 1.27536 1.23085 0.96154 0.96750 0.92337 0.93662 0.99177 0.99410 0.96215 0.91640 0.94117 0.89381 0.90091 0.88876 0.82937 0.83840 0.92526 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.90 13.65 21.45 0.29 -59.61 16 2 C -0.04 -2.30 5.46 84.65 0.46 -1.84 16 3 Si 1.12 51.36 29.90 68.60 2.05 53.41 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.62 -37.35 9.11 25.60 0.23 -37.12 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.02 1.18 3.96 29.85 0.12 1.29 16 10 C 0.08 3.52 4.78 86.31 0.41 3.93 16 11 N -0.53 -20.51 5.35 -883.01 -4.73 -25.24 16 12 C 0.03 0.92 6.70 86.45 0.58 1.50 16 13 C -0.11 -2.67 6.66 31.47 0.21 -2.46 16 14 C 0.09 2.40 4.19 46.12 0.19 2.59 16 15 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 16 N -0.85 -18.34 9.28 -163.69 -1.52 -19.86 16 17 C 0.05 1.65 5.04 86.65 0.44 2.08 16 18 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 19 H -0.01 -0.61 8.01 -2.38 -0.02 -0.63 16 20 H -0.01 -0.73 7.05 -2.39 -0.02 -0.74 16 21 H 0.02 0.90 7.97 -2.39 -0.02 0.88 16 22 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 23 H 0.04 1.22 7.67 -2.39 -0.02 1.20 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.36 5.69 9.07 -89.69 -0.81 4.88 16 28 H 0.35 7.07 9.07 -89.70 -0.81 6.25 16 29 H 0.06 2.25 7.77 -2.39 -0.02 2.23 16 30 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 Total: -1.00 -68.55 245.61 -1.66 -70.22 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -0.41 Total: 11.11 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 2.64 Total: -30.02 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.95 Total: -104.71 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Total: -68.55 -1.66 -70.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.748 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds