Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.48531 * 111.00124 * 177.60283 * 12 2 1 14 14 C 1.54935 * 103.22886 * 159.72406 * 13 12 2 15 15 C 1.54600 * 102.91956 * 322.58902 * 14 13 12 16 16 H 1.08996 * 110.30626 * 263.03836 * 15 14 13 17 17 N 1.46901 * 110.30419 * 140.87362 * 15 14 13 18 18 C 1.47896 * 111.00246 * 295.00345 * 12 2 1 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 23 23 H 1.09001 * 110.66943 * 278.15892 * 13 12 2 24 24 H 1.09006 * 110.66860 * 41.29203 * 13 12 2 25 25 H 1.09000 * 110.72344 * 204.22951 * 14 13 12 26 26 H 1.09004 * 110.87629 * 81.01566 * 14 13 12 27 27 H 1.00899 * 111.00500 * 64.28555 * 17 15 14 28 28 H 1.00901 * 110.99440 * 188.23428 * 17 15 14 29 29 H 1.08997 * 109.92009 * 333.50506 * 18 12 2 30 30 H 1.09001 * 109.91678 * 94.80382 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 3.5033 -0.7627 1.2052 14 6 3.8407 -1.0121 2.6967 15 6 2.7913 -0.1514 3.4371 16 1 3.2197 0.8116 3.7146 17 7 2.3037 -0.8565 4.6300 18 6 1.6461 0.0442 2.4264 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7089 1.1612 -3.4844 23 1 3.8516 -1.5910 0.5883 24 1 3.9344 0.1792 0.8656 25 1 4.8503 -0.6713 2.9259 26 1 3.7238 -2.0657 2.9504 27 1 3.0464 -0.9904 5.2998 28 1 1.5254 -0.3675 5.0461 29 1 1.5266 1.1040 2.2013 30 1 0.7187 -0.3586 2.8335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050243963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = 2.940972 kcal Electronic energy + Delta-G solvation = -11654.396822 eV Core-core repulsion = 9677.286664 eV Total energy + Delta-G solvation = -1977.110158 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.37361 -34.48326 -32.38407 -30.30800 -27.75745 -26.53000 -24.79821 -21.42004 -20.06236 -19.12822 -16.47798 -15.47561 -15.29995 -14.95387 -14.17880 -13.42519 -13.01900 -12.47267 -12.34822 -11.60549 -11.24814 -10.94257 -10.83024 -10.60397 -10.58388 -10.43786 -10.03301 -10.02597 -9.75625 -8.81779 -8.50700 -8.40226 -7.18368 -5.98226 -4.02465 3.31686 3.39353 3.44433 4.43876 4.73160 5.02243 5.14275 5.31693 5.45106 5.65114 5.96545 6.17107 6.25928 6.28159 6.47411 6.71153 6.73067 6.87852 7.11656 7.15362 7.39060 7.53362 7.58782 7.71003 7.86992 8.20170 8.37372 8.61711 9.04734 9.62650 11.08845 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.067266 B = 0.011205 C = 0.010058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.157271 B = 2498.391445 C = 2783.208382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.202 3.798 3 H -0.002 1.002 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.507 5.507 13 C 0.054 3.946 14 C -0.120 4.120 15 C 0.077 3.923 16 H 0.032 0.968 17 N -0.837 5.837 18 C 0.044 3.956 19 H 0.034 0.966 20 H 0.084 0.916 21 H 0.005 0.995 22 H 0.259 0.741 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.334 0.666 28 H 0.337 0.663 29 H 0.033 0.967 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 -0.553 9.316 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.232 5.232 13 C -0.074 4.074 14 C -0.159 4.159 15 C -0.034 4.034 16 H 0.049 0.951 17 N -0.367 5.367 18 C -0.085 4.085 19 H 0.053 0.947 20 H 0.103 0.897 21 H 0.024 0.976 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.051 0.949 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.964 -1.547 8.638 9.263 hybrid contribution 0.841 1.394 -0.379 1.671 sum 3.805 -0.153 8.260 9.096 Atomic orbital electron populations 1.21766 0.97619 0.99645 0.99727 1.19461 0.92627 0.91890 0.86471 0.98431 1.21182 1.30789 1.12211 0.89756 0.91918 1.24947 0.95248 0.95105 0.99058 1.69904 1.37097 1.23166 1.23241 0.86463 0.78588 0.79624 0.82876 1.19712 1.21031 1.21191 1.64852 1.08143 1.48220 1.01982 1.22919 0.90172 1.00465 0.93872 1.22629 0.96322 1.00784 0.96152 1.22273 0.95946 0.94126 0.91088 0.95053 1.58818 1.12473 1.55674 1.09741 1.22824 0.97553 0.96262 0.91823 0.94676 0.89747 0.97605 0.93090 0.90350 0.94596 0.92517 0.90252 0.85414 0.85081 0.94917 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.95 37.16 0.33 -2.97 16 2 C 0.20 5.30 1.77 -68.87 -0.12 5.18 16 3 H 0.00 -0.05 7.96 -51.93 -0.41 -0.47 16 4 C -0.50 -14.08 8.06 -34.44 -0.28 -14.36 16 5 H 0.06 1.77 6.81 -52.49 -0.36 1.41 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.97 11.32 55.43 0.63 -25.34 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.51 -11.55 5.10 -223.89 -1.14 -12.69 16 13 C 0.05 1.11 5.69 -1.90 -0.01 1.10 16 14 C -0.12 -1.97 6.78 -24.87 -0.17 -2.14 16 15 C 0.08 1.22 4.12 -66.35 -0.27 0.95 16 16 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 17 N -0.84 -11.17 9.14 -3.52 -0.03 -11.20 16 18 C 0.04 0.86 5.30 -2.76 -0.01 0.85 16 19 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 20 H 0.08 2.33 6.07 -51.93 -0.32 2.01 16 21 H 0.00 0.12 7.35 -51.93 -0.38 -0.27 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.08 1.64 7.32 -51.93 -0.38 1.26 16 24 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 27 H 0.33 3.65 9.08 -39.29 -0.36 3.30 16 28 H 0.34 3.94 8.99 -39.29 -0.35 3.59 16 29 H 0.03 0.65 7.65 -51.93 -0.40 0.25 16 30 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 LS Contribution 240.35 15.07 3.62 3.62 Total: -1.00 -29.62 240.35 -7.18 -36.80 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.60 Total: 2.05 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.63 Total: -9.88 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.55 Total: -49.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.62 -7.18 -36.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.736 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds