Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.48531 * 111.00124 * 177.60283 * 12 2 1 14 14 C 1.54935 * 103.22886 * 159.72406 * 13 12 2 15 15 C 1.54600 * 102.91956 * 322.58902 * 14 13 12 16 16 H 1.08996 * 110.30626 * 263.03836 * 15 14 13 17 17 N 1.46901 * 110.30419 * 140.87362 * 15 14 13 18 18 C 1.47896 * 111.00246 * 295.00345 * 12 2 1 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 23 23 H 1.09001 * 110.66943 * 278.15892 * 13 12 2 24 24 H 1.09006 * 110.66860 * 41.29203 * 13 12 2 25 25 H 1.09000 * 110.72344 * 204.22951 * 14 13 12 26 26 H 1.09004 * 110.87629 * 81.01566 * 14 13 12 27 27 H 1.00899 * 111.00500 * 64.28555 * 17 15 14 28 28 H 1.00901 * 110.99440 * 188.23428 * 17 15 14 29 29 H 1.08997 * 109.92009 * 333.50506 * 18 12 2 30 30 H 1.09001 * 109.91678 * 94.80382 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 3.5033 -0.7627 1.2052 14 6 3.8407 -1.0121 2.6967 15 6 2.7913 -0.1514 3.4371 16 1 3.2197 0.8116 3.7146 17 7 2.3037 -0.8565 4.6300 18 6 1.6461 0.0442 2.4264 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7089 1.1612 -3.4844 23 1 3.8516 -1.5910 0.5883 24 1 3.9344 0.1792 0.8656 25 1 4.8503 -0.6713 2.9259 26 1 3.7238 -2.0657 2.9504 27 1 3.0464 -0.9904 5.2998 28 1 1.5254 -0.3675 5.0461 29 1 1.5266 1.1040 2.2013 30 1 0.7187 -0.3586 2.8335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050243963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = -19.838577 kcal Electronic energy + Delta-G solvation = -11655.384617 eV Core-core repulsion = 9677.286664 eV Total energy + Delta-G solvation = -1978.097953 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.96416 -36.22550 -34.15456 -32.02481 -29.46183 -28.16556 -26.82286 -23.16070 -21.68639 -20.76214 -18.46643 -17.21788 -16.87300 -16.09041 -16.05458 -15.07443 -14.81344 -14.23673 -14.08991 -13.29736 -13.13618 -12.85420 -12.56918 -12.42782 -12.22372 -12.03922 -11.85914 -11.78578 -11.64787 -10.89849 -10.55153 -9.59097 -9.01223 -8.13269 -6.25443 1.40276 1.41988 1.54396 2.41485 3.14720 3.43181 3.62419 3.75720 3.93880 4.33066 4.47748 4.71937 4.75003 4.82129 4.93087 4.97917 5.04492 5.05299 5.19976 5.30652 5.44685 5.70464 5.73626 6.19202 6.31428 6.35528 6.65785 6.70261 6.89145 7.44096 8.93361 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.067266 B = 0.011205 C = 0.010058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.157271 B = 2498.391445 C = 2783.208382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.207 3.793 3 H -0.036 1.036 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.521 5.521 13 C 0.049 3.951 14 C -0.107 4.107 15 C 0.088 3.912 16 H 0.049 0.951 17 N -0.840 5.840 18 C 0.041 3.959 19 H 0.029 0.971 20 H 0.061 0.939 21 H 0.025 0.975 22 H 0.262 0.738 23 H 0.066 0.934 24 H 0.022 0.978 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.352 0.648 28 H 0.348 0.652 29 H 0.022 0.978 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -1.200 10.284 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H -0.019 1.019 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.246 5.246 13 C -0.079 4.079 14 C -0.145 4.145 15 C -0.024 4.024 16 H 0.066 0.934 17 N -0.373 5.373 18 C -0.088 4.088 19 H 0.048 0.952 20 H 0.079 0.921 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.040 0.960 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.766 -2.199 9.640 10.580 hybrid contribution 0.577 1.609 -0.634 1.823 sum 4.343 -0.590 9.006 10.016 Atomic orbital electron populations 1.21587 0.97364 0.99089 0.99544 1.19259 0.92829 0.90126 0.87844 1.01902 1.21421 1.31084 1.12246 0.90990 0.92544 1.25760 0.95342 0.95795 1.02037 1.70024 1.37796 1.24262 1.24061 0.85432 0.78155 0.78596 0.79006 1.19165 1.20497 1.20491 1.64752 1.09750 1.48192 1.01891 1.22948 0.88736 0.99301 0.96924 1.22552 0.98147 1.01091 0.92752 1.22079 0.94092 0.95118 0.91128 0.93359 1.58694 1.13559 1.55414 1.09611 1.22878 0.99248 0.95182 0.91444 0.95191 0.92050 0.95603 0.92871 0.91599 0.95931 0.89468 0.90197 0.83399 0.83835 0.95967 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.95 71.98 0.64 -5.45 16 2 C 0.21 11.09 1.77 44.17 0.08 11.17 16 3 H -0.04 -2.16 7.96 -2.39 -0.02 -2.18 16 4 C -0.52 -29.65 8.06 25.60 0.21 -29.44 16 5 H 0.06 3.22 6.81 -2.91 -0.02 3.20 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -54.26 11.32 21.45 0.24 -54.02 16 8 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.52 -23.74 5.10 -862.26 -4.40 -28.14 16 13 C 0.05 1.99 5.69 86.65 0.49 2.49 16 14 C -0.11 -3.23 6.78 31.80 0.22 -3.02 16 15 C 0.09 2.55 4.12 45.79 0.19 2.74 16 16 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 17 N -0.84 -19.67 9.14 -165.03 -1.51 -21.18 16 18 C 0.04 1.56 5.30 86.45 0.46 2.02 16 19 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 21 H 0.02 1.17 7.35 -2.38 -0.02 1.16 16 22 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 23 H 0.07 2.77 7.32 -2.39 -0.02 2.76 16 24 H 0.02 0.96 8.02 -2.38 -0.02 0.94 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.43 8.06 -2.39 -0.02 2.41 16 27 H 0.35 6.34 9.08 -89.69 -0.81 5.52 16 28 H 0.35 7.06 8.99 -89.69 -0.81 6.25 16 29 H 0.02 0.88 7.65 -2.39 -0.02 0.86 16 30 H 0.07 2.75 7.91 -2.39 -0.02 2.73 16 Total: -1.00 -63.27 240.35 -1.40 -64.67 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.49 Total: 10.60 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 2.73 Total: -18.54 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -5.66 Total: -103.34 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.27 -1.40 -64.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.831 kcal (2) G-P(sol) polarization free energy of solvation -63.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds