Wall clock time and date at job start Mon Mar 30 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 111.00395 * 2 1 4 4 C 1.46898 * 111.00409 * 123.95489 * 2 1 3 5 5 H 1.09003 * 110.91318 * 303.90419 * 4 2 1 6 6 C 1.55153 * 111.00907 * 179.97438 * 4 2 1 7 7 C 1.54323 * 103.10236 * 206.33611 * 6 4 2 8 8 N 1.47486 * 107.03754 * 22.24109 * 7 6 4 9 9 C 1.36932 * 125.59278 * 181.00707 * 8 7 6 10 10 H 1.08009 * 119.99968 * 180.02562 * 9 8 7 11 11 C 1.38806 * 120.00375 * 0.02562 * 9 8 7 12 12 N 1.31621 * 119.99804 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00331 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46765 * 89.99781 * 13 11 9 15 15 H 1.48499 * 109.47272 * 209.99882 * 13 11 9 16 16 H 1.48499 * 109.47136 * 330.00058 * 13 11 9 17 17 C 1.47428 * 108.75727 * 1.02624 * 8 7 6 18 18 H 1.08997 * 109.47087 * 296.04580 * 1 2 3 19 19 H 1.09002 * 109.47379 * 56.04435 * 1 2 3 20 20 H 1.08998 * 109.47044 * 176.04183 * 1 2 3 21 21 H 1.08995 * 109.47544 * 183.95398 * 3 2 1 22 22 H 1.09004 * 109.47185 * 303.95588 * 3 2 1 23 23 H 1.09004 * 109.47161 * 63.94939 * 3 2 1 24 24 H 1.09002 * 110.72030 * 324.78878 * 6 4 2 25 25 H 1.09003 * 110.72184 * 87.88529 * 6 4 2 26 26 H 1.09000 * 109.88693 * 141.69901 * 7 6 4 27 27 H 1.09005 * 109.88012 * 262.86516 * 7 6 4 28 28 H 0.97005 * 120.00149 * 180.02562 * 12 11 9 29 29 H 1.09000 * 110.36462 * 217.05803 * 17 8 7 30 30 H 1.08998 * 110.36847 * 94.73011 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6047 -0.3816 2.0797 6 6 3.5470 -0.7666 1.1373 7 6 3.8964 -2.0721 1.8823 8 7 2.7228 -2.9587 1.7743 9 6 2.6165 -4.2102 2.3197 10 1 1.7114 -4.7836 2.1835 11 6 3.6720 -4.7421 3.0475 12 7 4.7753 -4.0437 3.2130 13 14 3.5273 -6.4498 3.7908 14 1 4.0174 -7.4571 2.8159 15 1 4.3437 -6.5214 5.0292 16 1 2.1059 -6.7283 4.1182 17 6 1.6838 -2.2755 0.9823 18 1 -0.3633 0.4512 0.9233 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3633 -1.0252 -0.0709 21 1 3.0828 1.3432 -0.0709 22 1 1.5898 1.9164 -0.8524 23 1 1.7044 1.8724 0.9233 24 1 3.9325 -0.7892 0.1179 25 1 3.9331 0.0995 1.6749 26 1 4.7637 -2.5426 1.4191 27 1 4.1047 -1.8564 2.9303 28 1 5.5131 -4.4155 3.7213 29 1 0.6942 -2.5013 1.3796 30 1 1.7496 -2.5707 -0.0649 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062965513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:02 Heat of formation + Delta-G solvation = 11.065669 kcal Electronic energy + Delta-G solvation = -11650.664901 eV Core-core repulsion = 9673.907056 eV Total energy + Delta-G solvation = -1976.757844 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81033 -36.90204 -34.00644 -31.13141 -29.37214 -28.09428 -26.43858 -24.10571 -21.88992 -20.92244 -18.90094 -17.28372 -16.56780 -16.13293 -15.46842 -15.32567 -14.76941 -14.09017 -13.87420 -13.65483 -13.09882 -13.03732 -12.77324 -12.69929 -12.42335 -11.98340 -11.84058 -11.75310 -11.57974 -11.55237 -10.71930 -9.27586 -8.91694 -7.85398 -5.21897 1.45513 1.48417 1.56997 2.48384 2.99282 3.33330 3.68594 3.87129 4.11464 4.27919 4.35386 4.53401 4.66828 4.69792 4.73083 4.83562 4.98437 4.99844 5.05710 5.11577 5.20692 5.43375 5.63394 5.73308 6.10583 6.19398 6.22370 7.08498 7.75353 8.41238 9.25385 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.083297 B = 0.010400 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.066077 B = 2691.780227 C = 2967.153387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.082 3.918 5 H 0.041 0.959 6 C -0.119 4.119 7 C 0.186 3.814 8 N -0.631 5.631 9 C -0.245 4.245 10 H 0.083 0.917 11 C -0.069 4.069 12 N -0.953 5.953 13 Si 0.983 3.017 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.268 1.268 17 C 0.147 3.853 18 H 0.026 0.974 19 H 0.088 0.912 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.026 0.974 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.008 0.992 27 H 0.013 0.987 28 H 0.247 0.753 29 H 0.037 0.963 30 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 9.005 -5.047 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.027 4.027 5 H 0.059 0.941 6 C -0.157 4.157 7 C 0.061 3.939 8 N -0.358 5.358 9 C -0.374 4.374 10 H 0.100 0.900 11 C -0.261 4.261 12 N -0.602 5.602 13 Si 0.811 3.189 14 H -0.212 1.212 15 H -0.219 1.219 16 H -0.193 1.193 17 C 0.022 3.978 18 H 0.044 0.956 19 H 0.107 0.893 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.105 0.895 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.027 0.973 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.151 8.652 -5.364 11.894 hybrid contribution 0.027 -0.648 1.313 1.465 sum -6.123 8.004 -4.051 10.861 Atomic orbital electron populations 1.22428 0.86363 1.02419 1.01114 1.61974 1.08915 1.14649 1.41784 1.22437 1.01217 0.87594 1.01047 1.22610 0.95216 0.93614 0.91289 0.94123 1.22759 0.94635 0.97596 1.00753 1.20977 0.88881 0.87777 0.96259 1.44894 1.14162 1.15403 1.61329 1.19489 1.00438 0.91496 1.25973 0.89957 1.25718 0.96055 1.02751 1.01620 1.70198 1.05757 1.38282 1.45919 0.85017 0.77693 0.79000 0.77238 1.21196 1.21888 1.19250 1.21556 0.91417 0.90726 0.94128 0.95568 0.89321 0.91994 0.91289 0.89521 0.95574 0.90807 0.90331 0.97330 0.96919 0.94333 0.94443 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.43 127.69 1.20 1.81 16 2 N -0.55 -16.26 4.92 -915.07 -4.50 -20.76 16 3 C 0.02 0.58 9.29 127.69 1.19 1.77 16 4 C 0.08 3.02 2.71 46.31 0.13 3.15 16 5 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 6 C -0.12 -4.64 5.08 31.78 0.16 -4.48 16 7 C 0.19 9.72 5.39 86.64 0.47 10.18 16 8 N -0.63 -34.41 3.41 -690.79 -2.35 -36.76 16 9 C -0.25 -14.33 10.28 84.03 0.86 -13.47 16 10 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 11 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 12 N -0.95 -58.99 10.31 21.65 0.22 -58.76 16 13 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C 0.15 6.48 5.97 86.86 0.52 6.99 16 18 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 19 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 20 H 0.06 1.61 7.35 -2.39 -0.02 1.59 16 21 H 0.07 1.63 6.99 -2.39 -0.02 1.62 16 22 H 0.09 1.61 8.12 -2.38 -0.02 1.59 16 23 H 0.03 0.58 8.14 -2.38 -0.02 0.57 16 24 H 0.07 2.77 8.09 -2.39 -0.02 2.75 16 25 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 26 H 0.01 0.49 7.51 -2.39 -0.02 0.47 16 27 H 0.01 0.73 7.39 -2.38 -0.02 0.71 16 28 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 29 H 0.04 1.59 8.03 -2.39 -0.02 1.57 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.56 241.55 1.47 -65.08 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 1.08 Total: -0.04 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.99 Total: 2.39 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -6.63 Total: -116.28 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -66.56 1.47 -65.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.148 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds