Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.48747 * 2 1 4 4 C 1.53238 * 109.48987 * 120.04636 * 2 1 3 5 5 N 1.47086 * 108.51907 * 66.13762 * 4 2 1 6 6 C 1.36935 * 120.87839 * 231.15882 * 5 4 2 7 7 H 1.08009 * 120.00145 * 153.50682 * 6 5 4 8 8 C 1.38818 * 120.00338 * 333.51233 * 6 5 4 9 9 N 1.31612 * 120.00230 * 159.44152 * 8 6 5 10 10 Si 1.86804 * 119.99607 * 339.43651 * 8 6 5 11 11 H 1.48498 * 109.46839 * 91.98020 * 10 8 6 12 12 H 1.48500 * 109.47072 * 211.97996 * 10 8 6 13 13 H 1.48506 * 109.46915 * 331.98259 * 10 8 6 14 14 C 1.47071 * 118.24119 * 51.17690 * 5 4 2 15 15 C 1.53238 * 108.52161 * 308.81926 * 14 5 4 16 16 H 1.08996 * 109.49622 * 293.83834 * 15 14 5 17 17 C 1.53003 * 109.49358 * 173.78504 * 15 14 5 18 18 N 1.46898 * 109.34015 * 53.83245 * 15 14 5 19 19 H 1.08998 * 109.47315 * 299.95025 * 1 2 3 20 20 H 1.09000 * 109.47024 * 59.95070 * 1 2 3 21 21 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.62999 * 185.83649 * 4 2 1 23 23 H 1.08997 * 109.63599 * 306.22935 * 4 2 1 24 24 H 0.97005 * 119.99607 * 179.97438 * 9 8 6 25 25 H 1.09007 * 109.62460 * 68.52831 * 14 5 4 26 26 H 1.08997 * 109.63471 * 188.91025 * 14 5 4 27 27 H 1.09008 * 109.46991 * 60.00178 * 17 15 14 28 28 H 1.09000 * 109.47251 * 179.97438 * 17 15 14 29 29 H 1.08998 * 109.47559 * 300.00377 * 17 15 14 30 30 H 1.00903 * 111.00348 * 172.74859 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7233 1.2505 5 7 1.6653 -2.1421 1.1560 6 6 1.0190 -2.7681 2.1882 7 1 0.3832 -3.6186 1.9908 8 6 1.1807 -2.3095 3.4884 9 7 0.2909 -2.6141 4.4092 10 14 2.6614 -1.2603 3.9313 11 1 2.3146 0.1754 3.7770 12 1 3.0535 -1.5263 5.3387 13 1 3.7931 -1.5958 3.0301 14 6 2.0023 -2.8708 -0.0763 15 6 1.4925 -2.0629 -1.2744 16 1 0.4031 -2.0346 -1.2570 17 6 1.9655 -2.7208 -2.5723 18 7 2.0203 -0.6942 -1.1982 19 1 -0.3634 0.5130 0.8904 20 1 -0.3633 0.5146 -0.8895 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1263 -0.6351 1.3066 23 1 1.5916 -0.2807 2.1392 24 1 0.4042 -2.2939 5.3178 25 1 3.0836 -2.9890 -0.1477 26 1 1.5270 -3.8516 -0.0634 27 1 1.5756 -3.7373 -2.6274 28 1 1.6023 -2.1461 -3.4243 29 1 3.0550 -2.7481 -2.5898 30 1 1.7982 -0.1739 -2.0337 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = 26.502724 kcal Electronic energy + Delta-G solvation = -12080.895812 eV Core-core repulsion = 10104.807369 eV Total energy + Delta-G solvation = -1976.088443 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.54971 -33.99460 -32.58883 -31.19840 -27.61258 -26.37254 -25.67812 -21.70644 -21.47415 -18.59394 -16.81176 -15.69749 -14.83493 -14.53971 -14.14657 -13.90545 -13.07659 -12.49740 -12.36496 -11.95512 -11.77165 -11.73028 -11.28314 -11.15798 -10.63157 -10.48841 -10.19975 -9.92761 -9.67457 -9.42667 -8.62249 -7.96653 -6.88521 -5.91562 -3.25768 3.35295 3.51800 3.57119 4.56564 4.62152 4.99907 5.34280 5.46621 5.62336 5.65007 5.77442 5.87671 5.94511 6.09620 6.21163 6.30216 6.38516 6.41980 6.48778 6.68342 6.71614 6.83471 6.99663 7.57974 7.86079 7.98740 8.35860 8.97388 9.76005 10.16534 11.24602 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.050307 B = 0.015850 C = 0.014838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.447625 B = 1766.156030 C = 1886.587351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.067 3.933 3 H 0.071 0.929 4 C 0.134 3.866 5 N -0.606 5.606 6 C -0.256 4.256 7 H 0.085 0.915 8 C 0.022 3.978 9 N -0.911 5.911 10 Si 0.883 3.117 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.158 3.842 15 C 0.060 3.940 16 H 0.043 0.957 17 C -0.142 4.142 18 N -0.677 5.677 19 H 0.056 0.944 20 H 0.036 0.964 21 H 0.072 0.928 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 3.758 -10.748 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.044 4.044 3 H 0.089 0.911 4 C 0.008 3.992 5 N -0.330 5.330 6 C -0.385 4.385 7 H 0.102 0.898 8 C -0.177 4.177 9 N -0.554 5.554 10 Si 0.713 3.287 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.032 3.968 15 C -0.051 4.051 16 H 0.061 0.939 17 C -0.200 4.200 18 N -0.308 5.308 19 H 0.075 0.925 20 H 0.055 0.945 21 H 0.091 0.909 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.937 3.528 -10.254 11.235 hybrid contribution -0.170 0.857 0.150 0.887 sum 2.767 4.386 -10.104 11.357 Atomic orbital electron populations 1.22339 0.97453 1.03103 1.00287 1.22073 0.93185 0.96876 0.92313 0.91135 1.21434 0.97195 0.85281 0.95242 1.44365 1.68283 1.04987 1.15340 1.18923 1.20461 1.14303 0.84774 0.89763 1.25242 0.98028 0.98834 0.95557 1.69836 1.33993 1.48461 1.03110 0.86962 0.85652 0.79526 0.76531 1.21670 1.23248 1.19511 1.21026 0.97257 0.93873 0.84694 1.22080 0.97306 0.89506 0.96162 0.93914 1.21776 1.01877 1.00044 0.96288 1.60556 1.62912 1.02936 1.04358 0.92525 0.94521 0.90934 0.95231 0.90906 0.92845 0.95441 0.92013 0.92363 0.93513 0.92142 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.77 37.16 0.33 -2.81 16 2 C 0.07 1.25 3.70 -67.59 -0.25 1.00 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.13 3.08 3.74 -3.60 -0.01 3.06 16 5 N -0.61 -14.88 2.29 -172.01 -0.39 -15.27 16 6 C -0.26 -7.29 10.08 -15.06 -0.15 -7.44 16 7 H 0.08 2.55 8.06 -52.48 -0.42 2.12 16 8 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 9 N -0.91 -28.27 13.97 55.49 0.78 -27.49 16 10 Si 0.88 22.98 24.31 -169.99 -4.13 18.85 16 11 H -0.29 -7.23 6.58 56.52 0.37 -6.86 16 12 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 13 H -0.27 -7.02 6.61 56.52 0.37 -6.64 16 14 C 0.16 3.27 5.98 -3.61 -0.02 3.25 16 15 C 0.06 1.04 2.81 -67.59 -0.19 0.85 16 16 H 0.04 0.78 6.10 -51.93 -0.32 0.46 16 17 C -0.14 -1.92 9.43 37.16 0.35 -1.57 16 18 N -0.68 -11.46 6.30 -99.48 -0.63 -12.09 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.07 1.49 5.92 -51.93 -0.31 1.18 16 22 H 0.03 0.70 6.94 -51.93 -0.36 0.34 16 23 H 0.07 1.80 4.61 -51.93 -0.24 1.56 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.26 7.95 -51.93 -0.41 0.84 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.33 4.66 8.77 -39.29 -0.34 4.31 16 LS Contribution 230.56 15.07 3.47 3.47 Total: -1.00 -30.55 230.56 -5.50 -36.05 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.56 Total: -0.40 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.04 Total: -3.11 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.25 Total: -54.86 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.13 Total: 18.85 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.55 -5.50 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.550 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds