Wall clock time and date at job start Mon Mar 30 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.48747 * 2 1 4 4 C 1.53238 * 109.48987 * 120.04636 * 2 1 3 5 5 N 1.47086 * 108.51907 * 66.13762 * 4 2 1 6 6 C 1.36935 * 120.87839 * 231.15882 * 5 4 2 7 7 H 1.08009 * 120.00145 * 153.50682 * 6 5 4 8 8 C 1.38818 * 120.00338 * 333.51233 * 6 5 4 9 9 N 1.31612 * 120.00230 * 159.44152 * 8 6 5 10 10 Si 1.86804 * 119.99607 * 339.43651 * 8 6 5 11 11 H 1.48498 * 109.46839 * 91.98020 * 10 8 6 12 12 H 1.48500 * 109.47072 * 211.97996 * 10 8 6 13 13 H 1.48506 * 109.46915 * 331.98259 * 10 8 6 14 14 C 1.47071 * 118.24119 * 51.17690 * 5 4 2 15 15 C 1.53238 * 108.52161 * 308.81926 * 14 5 4 16 16 H 1.08996 * 109.49622 * 293.83834 * 15 14 5 17 17 C 1.53003 * 109.49358 * 173.78504 * 15 14 5 18 18 N 1.46898 * 109.34015 * 53.83245 * 15 14 5 19 19 H 1.08998 * 109.47315 * 299.95025 * 1 2 3 20 20 H 1.09000 * 109.47024 * 59.95070 * 1 2 3 21 21 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.62999 * 185.83649 * 4 2 1 23 23 H 1.08997 * 109.63599 * 306.22935 * 4 2 1 24 24 H 0.97005 * 119.99607 * 179.97438 * 9 8 6 25 25 H 1.09007 * 109.62460 * 68.52831 * 14 5 4 26 26 H 1.08997 * 109.63471 * 188.91025 * 14 5 4 27 27 H 1.09008 * 109.46991 * 60.00178 * 17 15 14 28 28 H 1.09000 * 109.47251 * 179.97438 * 17 15 14 29 29 H 1.08998 * 109.47559 * 300.00377 * 17 15 14 30 30 H 1.00903 * 111.00348 * 172.74859 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7233 1.2505 5 7 1.6653 -2.1421 1.1560 6 6 1.0190 -2.7681 2.1882 7 1 0.3832 -3.6186 1.9908 8 6 1.1807 -2.3095 3.4884 9 7 0.2909 -2.6141 4.4092 10 14 2.6614 -1.2603 3.9313 11 1 2.3146 0.1754 3.7770 12 1 3.0535 -1.5263 5.3387 13 1 3.7931 -1.5958 3.0301 14 6 2.0023 -2.8708 -0.0763 15 6 1.4925 -2.0629 -1.2744 16 1 0.4031 -2.0346 -1.2570 17 6 1.9655 -2.7208 -2.5723 18 7 2.0203 -0.6942 -1.1982 19 1 -0.3634 0.5130 0.8904 20 1 -0.3633 0.5146 -0.8895 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1263 -0.6351 1.3066 23 1 1.5916 -0.2807 2.1392 24 1 0.4042 -2.2939 5.3178 25 1 3.0836 -2.9890 -0.1477 26 1 1.5270 -3.8516 -0.0634 27 1 1.5756 -3.7373 -2.6274 28 1 1.6023 -2.1461 -3.4243 29 1 3.0550 -2.7481 -2.5898 30 1 1.7982 -0.1739 -2.0337 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:47 Heat of formation + Delta-G solvation = 3.686551 kcal Electronic energy + Delta-G solvation = -12081.885195 eV Core-core repulsion = 10104.807369 eV Total energy + Delta-G solvation = -1977.077827 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.12956 -35.86176 -34.03526 -33.31038 -28.98927 -27.93073 -27.62642 -23.61711 -22.93692 -20.23010 -18.78794 -17.46157 -16.42688 -16.21002 -15.94907 -15.58453 -14.63770 -14.40222 -14.15098 -13.57547 -13.29185 -13.04474 -12.94412 -12.81505 -12.22459 -12.12340 -12.01020 -11.71571 -11.49746 -11.34371 -10.72699 -9.42871 -8.85181 -8.18296 -5.48557 1.27083 1.39072 1.48922 2.39691 3.03521 3.22282 3.38174 4.06907 4.11049 4.25637 4.31734 4.47712 4.55195 4.65143 4.74071 4.88019 4.92166 4.95333 5.05676 5.13656 5.23645 5.35755 5.50656 5.81239 6.09745 6.15358 6.66766 6.88744 7.60252 8.03835 9.01753 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.050307 B = 0.015850 C = 0.014838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.447625 B = 1766.156030 C = 1886.587351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 H 0.100 0.900 4 C 0.128 3.872 5 N -0.619 5.619 6 C -0.245 4.245 7 H 0.052 0.948 8 C -0.034 4.034 9 N -0.957 5.957 10 Si 0.946 3.054 11 H -0.272 1.272 12 H -0.310 1.310 13 H -0.268 1.268 14 C 0.150 3.850 15 C 0.068 3.932 16 H 0.033 0.967 17 C -0.132 4.132 18 N -0.674 5.674 19 H 0.044 0.956 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.027 0.973 23 H 0.052 0.948 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 5.225 -12.907 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.039 4.039 3 H 0.118 0.882 4 C 0.002 3.998 5 N -0.343 5.343 6 C -0.375 4.375 7 H 0.069 0.931 8 C -0.228 4.228 9 N -0.603 5.603 10 Si 0.775 3.225 11 H -0.199 1.199 12 H -0.239 1.239 13 H -0.193 1.193 14 C 0.025 3.975 15 C -0.043 4.043 16 H 0.051 0.949 17 C -0.190 4.190 18 N -0.307 5.307 19 H 0.063 0.937 20 H 0.089 0.911 21 H 0.061 0.939 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.995 5.017 -12.475 14.027 hybrid contribution -0.530 0.341 0.748 0.978 sum 3.465 5.358 -11.726 13.350 Atomic orbital electron populations 1.22256 0.97275 1.01475 1.01432 1.21943 0.93184 0.97709 0.91029 0.88249 1.21478 0.96840 0.84517 0.96925 1.44480 1.68244 1.06149 1.15476 1.18859 1.19405 1.13147 0.86086 0.93054 1.25831 1.00320 1.01114 0.95558 1.69957 1.35826 1.51023 1.03507 0.85934 0.82049 0.78922 0.75583 1.19878 1.23853 1.19310 1.21232 0.97322 0.94232 0.84683 1.21932 0.96626 0.89589 0.96150 0.94898 1.21703 1.02004 1.00539 0.94780 1.60463 1.62651 1.02818 1.04735 0.93681 0.91064 0.93900 0.95514 0.93024 0.92951 0.95318 0.92657 0.91561 0.91035 0.91911 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 8.77 71.98 0.63 -5.01 16 2 C 0.07 2.49 3.70 45.00 0.17 2.66 16 3 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 4 C 0.13 5.65 3.74 86.35 0.32 5.97 16 5 N -0.62 -30.26 2.29 -698.12 -1.60 -31.86 16 6 C -0.25 -14.30 10.08 84.04 0.85 -13.46 16 7 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 8 C -0.03 -2.01 5.24 84.86 0.44 -1.56 16 9 N -0.96 -61.12 13.97 21.65 0.30 -60.81 16 10 Si 0.95 48.09 24.31 68.60 1.67 49.75 16 11 H -0.27 -12.97 6.58 99.48 0.65 -12.31 16 12 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 13 H -0.27 -13.39 6.61 99.48 0.66 -12.73 16 14 C 0.15 6.10 5.98 86.35 0.52 6.62 16 15 C 0.07 2.16 2.81 45.00 0.13 2.29 16 16 H 0.03 1.14 6.10 -2.39 -0.01 1.12 16 17 C -0.13 -3.09 9.43 71.98 0.68 -2.41 16 18 N -0.67 -20.31 6.30 -468.65 -2.95 -23.26 16 19 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.04 1.71 5.92 -2.39 -0.01 1.70 16 22 H 0.03 1.20 6.94 -2.39 -0.02 1.19 16 23 H 0.05 2.49 4.61 -2.39 -0.01 2.48 16 24 H 0.26 15.87 8.31 -92.70 -0.77 15.09 16 25 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 26 H 0.05 2.26 7.95 -2.39 -0.02 2.24 16 27 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.35 8.24 8.77 -89.69 -0.79 7.45 16 Total: -1.00 -66.46 230.56 1.38 -65.08 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.23 Total: 6.01 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 3.73 Total: -4.91 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.25 Total: -115.93 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.67 Total: 49.75 kcal Total: -66.46 1.38 -65.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.764 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds