Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.45780 * 2 1 4 4 C 1.53038 * 109.45887 * 119.96477 * 2 1 3 5 5 C 1.53193 * 109.31619 * 181.37287 * 4 2 1 6 6 N 1.46927 * 108.77748 * 305.37029 * 5 4 2 7 7 C 1.36929 * 120.63500 * 233.58459 * 6 5 4 8 8 H 1.07994 * 120.00472 * 152.30448 * 7 6 5 9 9 C 1.38823 * 119.99710 * 332.30825 * 7 6 5 10 10 N 1.31617 * 119.99601 * 342.59309 * 9 7 6 11 11 Si 1.86793 * 119.99892 * 162.59877 * 9 7 6 12 12 H 1.48502 * 109.47323 * 94.34576 * 11 9 7 13 13 H 1.48497 * 109.47157 * 214.34797 * 11 9 7 14 14 H 1.48496 * 109.47300 * 334.34614 * 11 9 7 15 15 C 1.46932 * 118.73576 * 53.60447 * 6 5 4 16 16 C 1.53193 * 108.89365 * 306.31982 * 15 6 5 17 17 H 1.08996 * 109.49932 * 294.75815 * 16 15 6 18 18 N 1.46896 * 109.49598 * 174.66010 * 16 15 6 19 19 H 1.08997 * 109.47677 * 300.03609 * 1 2 3 20 20 H 1.09008 * 109.47072 * 60.03335 * 1 2 3 21 21 H 1.09004 * 109.47123 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.49898 * 61.42600 * 4 2 1 23 23 H 1.09001 * 109.50239 * 301.32687 * 4 2 1 24 24 H 1.08997 * 109.59234 * 185.57782 * 5 4 2 25 25 H 1.09003 * 109.70453 * 65.22373 * 5 4 2 26 26 H 0.97000 * 119.99465 * 180.02562 * 10 9 7 27 27 H 1.08995 * 109.58789 * 66.18126 * 15 6 5 28 28 H 1.09000 * 109.58152 * 186.46474 * 15 6 5 29 29 H 1.00898 * 111.00183 * 60.00038 * 18 16 15 30 30 H 1.00906 * 111.00216 * 183.95403 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6889 1.2642 6 7 4.0677 -1.2492 -0.0001 7 6 4.9760 -2.2739 -0.0002 8 1 5.0088 -2.9664 -0.8282 9 6 5.8547 -2.4225 1.0642 10 7 6.0615 -1.4201 1.8917 11 14 6.7436 -4.0451 1.3218 12 1 8.0774 -3.9875 0.6714 13 1 6.9125 -4.2915 2.7764 14 1 5.9478 -5.1462 0.7224 15 6 3.5711 -0.6889 -1.2643 16 6 2.0396 -0.7212 -1.2537 17 1 1.6976 -1.7560 -1.2418 18 7 1.5267 -0.0483 -2.4545 19 1 -0.3634 0.5144 0.8896 20 1 -0.3634 0.5134 -0.8903 21 1 -0.3633 -1.0277 0.0005 22 1 1.6976 -1.7556 1.2384 23 1 1.6573 -0.2206 2.1399 24 1 3.9416 -1.2848 2.0984 25 1 3.9166 0.3398 1.3684 26 1 6.6757 -1.5239 2.6352 27 1 3.9142 0.3405 -1.3675 28 1 3.9434 -1.2834 -2.0986 29 1 1.8539 -0.5051 -3.2926 30 1 0.5189 0.0004 -2.4392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069719705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = 8.862762 kcal Electronic energy + Delta-G solvation = -11831.410779 eV Core-core repulsion = 9854.557410 eV Total energy + Delta-G solvation = -1976.853369 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.08940 -34.25529 -32.20110 -31.02604 -28.07079 -26.80923 -23.93483 -21.60697 -20.78389 -18.86796 -16.68294 -15.46973 -14.81405 -14.35400 -13.82046 -13.58989 -13.20974 -12.56841 -12.37883 -11.94954 -11.57206 -11.34570 -10.92874 -10.74368 -10.56857 -10.24088 -10.07968 -9.86837 -9.51201 -9.32470 -8.43746 -8.24354 -6.62749 -5.75512 -3.16996 3.38868 3.45837 3.48473 4.50303 4.93191 5.35647 5.40070 5.49096 5.59322 5.74277 5.98175 6.05112 6.23265 6.30178 6.37345 6.45616 6.65932 6.82637 6.87337 6.94038 7.01396 7.43436 7.60609 7.71873 7.81925 7.82940 8.49105 9.25280 9.89161 10.46308 11.33234 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063132 B = 0.012185 C = 0.011185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.405920 B = 2297.401599 C = 2502.779142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 H 0.068 0.932 4 C -0.136 4.136 5 C 0.169 3.831 6 N -0.592 5.592 7 C -0.252 4.252 8 H 0.064 0.936 9 C 0.001 3.999 10 N -0.902 5.902 11 Si 0.901 3.099 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.155 3.845 16 C 0.078 3.922 17 H 0.029 0.971 18 N -0.848 5.848 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.018 0.982 26 H 0.253 0.747 27 H 0.026 0.974 28 H 0.047 0.953 29 H 0.335 0.665 30 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 1.019 -3.516 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 H 0.087 0.913 4 C -0.176 4.176 5 C 0.043 3.957 6 N -0.315 5.315 7 C -0.382 4.382 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.547 5.547 11 Si 0.731 3.269 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.205 1.205 15 C 0.028 3.972 16 C -0.034 4.034 17 H 0.047 0.953 18 N -0.378 5.378 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.146 0.854 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.312 1.645 -3.105 9.024 hybrid contribution -0.009 -1.709 -0.010 1.709 sum -8.321 -0.065 -3.116 8.885 Atomic orbital electron populations 1.21883 0.96902 1.00789 1.00906 1.21089 0.93740 0.99901 0.94948 0.91325 1.22252 1.00622 0.99229 0.95479 1.20799 0.87446 0.97227 0.90186 1.44013 1.48146 1.39849 0.99462 1.19176 1.09877 1.02919 1.06195 0.91826 1.25025 0.97258 0.97469 0.99952 1.70049 1.37605 1.29011 1.17994 0.86296 0.79588 0.83822 0.77174 1.21459 1.21539 1.20492 1.20815 0.89721 0.96889 0.89766 1.21985 0.98227 0.94191 0.89008 0.95297 1.58761 1.14297 1.60184 1.04578 0.93124 0.93054 0.93528 0.92953 0.93142 0.89555 0.96391 0.93673 0.95626 0.93404 0.85354 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 37.15 0.33 -1.79 16 2 C -0.08 -1.40 2.42 -90.42 -0.22 -1.61 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.14 -2.72 5.36 -26.61 -0.14 -2.86 16 5 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 6 N -0.59 -15.42 3.00 -172.31 -0.52 -15.94 16 7 C -0.25 -7.12 9.58 -15.06 -0.14 -7.26 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 9 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 10 N -0.90 -26.71 11.19 55.49 0.62 -26.09 16 11 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.16 3.46 6.08 -3.71 -0.02 3.44 16 16 C 0.08 1.45 2.94 -67.43 -0.20 1.25 16 17 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 18 N -0.85 -12.83 9.22 -4.43 -0.04 -12.87 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.66 6.57 -51.92 -0.34 0.32 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 29 H 0.33 4.57 9.04 -39.29 -0.36 4.21 16 30 H 0.33 4.32 7.02 -39.29 -0.28 4.05 16 LS Contribution 237.70 15.07 3.58 3.58 Total: -1.00 -29.75 237.70 -6.52 -36.26 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.63 Total: 2.80 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -0.50 Total: -4.71 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.06 Total: -54.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.75 -6.52 -36.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069719705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.126 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds