Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.45780 * 2 1 4 4 C 1.53038 * 109.45887 * 119.96477 * 2 1 3 5 5 C 1.53193 * 109.31619 * 181.37287 * 4 2 1 6 6 N 1.46927 * 108.77748 * 305.37029 * 5 4 2 7 7 C 1.36929 * 120.63500 * 233.58459 * 6 5 4 8 8 H 1.07994 * 120.00472 * 152.30448 * 7 6 5 9 9 C 1.38823 * 119.99710 * 332.30825 * 7 6 5 10 10 N 1.31617 * 119.99601 * 342.59309 * 9 7 6 11 11 Si 1.86793 * 119.99892 * 162.59877 * 9 7 6 12 12 H 1.48502 * 109.47323 * 94.34576 * 11 9 7 13 13 H 1.48497 * 109.47157 * 214.34797 * 11 9 7 14 14 H 1.48496 * 109.47300 * 334.34614 * 11 9 7 15 15 C 1.46932 * 118.73576 * 53.60447 * 6 5 4 16 16 C 1.53193 * 108.89365 * 306.31982 * 15 6 5 17 17 H 1.08996 * 109.49932 * 294.75815 * 16 15 6 18 18 N 1.46896 * 109.49598 * 174.66010 * 16 15 6 19 19 H 1.08997 * 109.47677 * 300.03609 * 1 2 3 20 20 H 1.09008 * 109.47072 * 60.03335 * 1 2 3 21 21 H 1.09004 * 109.47123 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.49898 * 61.42600 * 4 2 1 23 23 H 1.09001 * 109.50239 * 301.32687 * 4 2 1 24 24 H 1.08997 * 109.59234 * 185.57782 * 5 4 2 25 25 H 1.09003 * 109.70453 * 65.22373 * 5 4 2 26 26 H 0.97000 * 119.99465 * 180.02562 * 10 9 7 27 27 H 1.08995 * 109.58789 * 66.18126 * 15 6 5 28 28 H 1.09000 * 109.58152 * 186.46474 * 15 6 5 29 29 H 1.00898 * 111.00183 * 60.00038 * 18 16 15 30 30 H 1.00906 * 111.00216 * 183.95403 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6889 1.2642 6 7 4.0677 -1.2492 -0.0001 7 6 4.9760 -2.2739 -0.0002 8 1 5.0088 -2.9664 -0.8282 9 6 5.8547 -2.4225 1.0642 10 7 6.0615 -1.4201 1.8917 11 14 6.7436 -4.0451 1.3218 12 1 8.0774 -3.9875 0.6714 13 1 6.9125 -4.2915 2.7764 14 1 5.9478 -5.1462 0.7224 15 6 3.5711 -0.6889 -1.2643 16 6 2.0396 -0.7212 -1.2537 17 1 1.6976 -1.7560 -1.2418 18 7 1.5267 -0.0483 -2.4545 19 1 -0.3634 0.5144 0.8896 20 1 -0.3634 0.5134 -0.8903 21 1 -0.3633 -1.0277 0.0005 22 1 1.6976 -1.7556 1.2384 23 1 1.6573 -0.2206 2.1399 24 1 3.9416 -1.2848 2.0984 25 1 3.9166 0.3398 1.3684 26 1 6.6757 -1.5239 2.6352 27 1 3.9142 0.3405 -1.3675 28 1 3.9434 -1.2834 -2.0986 29 1 1.8539 -0.5051 -3.2926 30 1 0.5189 0.0004 -2.4392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069719705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -12.066008 kcal Electronic energy + Delta-G solvation = -11832.318319 eV Core-core repulsion = 9854.557410 eV Total energy + Delta-G solvation = -1977.760909 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.73433 -36.08539 -33.72803 -33.01275 -29.66710 -28.55735 -25.78800 -23.24927 -22.58693 -20.50035 -18.71094 -17.04695 -16.55560 -15.96833 -15.62925 -15.33174 -14.88228 -14.10749 -14.05501 -13.46871 -13.16404 -13.09983 -12.67881 -12.63524 -12.26580 -12.10438 -11.91991 -11.62633 -11.22421 -11.02153 -10.54992 -9.55159 -8.71602 -7.90009 -5.35677 1.45103 1.46299 1.57016 2.48980 3.24398 3.46856 3.86833 3.98129 4.09910 4.20761 4.48586 4.63749 4.73371 4.74570 4.94699 4.99004 5.06991 5.17850 5.26749 5.33400 5.49735 5.50765 5.62792 5.74955 6.27063 6.39596 6.71436 7.12114 7.83026 8.35568 9.16908 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063132 B = 0.012185 C = 0.011185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.405920 B = 2297.401599 C = 2502.779142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 H 0.056 0.944 4 C -0.124 4.124 5 C 0.174 3.826 6 N -0.610 5.610 7 C -0.268 4.268 8 H 0.065 0.935 9 C -0.051 4.051 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.269 1.269 15 C 0.152 3.848 16 C 0.093 3.907 17 H 0.024 0.976 18 N -0.843 5.843 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.054 0.946 25 H -0.008 1.008 26 H 0.251 0.749 27 H 0.010 0.990 28 H 0.046 0.954 29 H 0.346 0.654 30 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 0.530 -4.224 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.164 4.164 5 C 0.048 3.952 6 N -0.334 5.334 7 C -0.398 4.398 8 H 0.083 0.917 9 C -0.246 4.246 10 N -0.581 5.581 11 Si 0.798 3.202 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.194 1.194 15 C 0.026 3.974 16 C -0.020 4.020 17 H 0.042 0.958 18 N -0.376 5.376 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.951 1.161 -3.847 10.732 hybrid contribution 0.519 -1.499 0.160 1.594 sum -9.432 -0.338 -3.687 10.133 Atomic orbital electron populations 1.21790 0.93337 1.01775 1.02608 1.21045 0.96624 0.98495 0.93369 0.92578 1.22082 0.96650 0.99817 0.97838 1.20641 0.90804 0.94819 0.88923 1.44275 1.48312 1.39828 1.00957 1.19522 1.10272 1.03631 1.06391 0.91704 1.25839 0.98337 1.00673 0.99791 1.70208 1.38461 1.30956 1.18482 0.85226 0.78327 0.79860 0.76820 1.21131 1.21579 1.19378 1.20918 0.92696 0.95529 0.88253 1.21624 0.95117 0.94391 0.90838 0.95808 1.58628 1.15658 1.59590 1.03714 0.91812 0.91098 0.92852 0.93134 0.91042 0.92779 0.98950 0.93987 0.97227 0.93507 0.84147 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.84 71.98 0.64 -2.79 16 2 C -0.08 -2.58 2.42 -10.67 -0.03 -2.61 16 3 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 4 C -0.12 -4.85 5.36 30.67 0.16 -4.69 16 5 C 0.17 8.82 5.31 86.36 0.46 9.28 16 6 N -0.61 -32.32 3.00 -699.08 -2.09 -34.41 16 7 C -0.27 -15.33 9.58 84.04 0.81 -14.52 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 9 C -0.05 -2.93 4.91 84.87 0.42 -2.51 16 10 N -0.94 -56.86 11.19 21.65 0.24 -56.61 16 11 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.15 6.80 6.08 86.36 0.53 7.32 16 16 C 0.09 3.28 2.94 45.10 0.13 3.41 16 17 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 18 N -0.84 -23.20 9.22 -167.93 -1.55 -24.74 16 19 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.07 1.50 6.57 -2.38 -0.02 1.49 16 21 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 3.07 6.04 -2.39 -0.01 3.05 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 29 H 0.35 8.51 9.04 -89.70 -0.81 7.70 16 30 H 0.35 7.77 7.02 -89.69 -0.63 7.14 16 Total: -1.00 -64.43 237.70 1.42 -63.00 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.32 Total: 12.21 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 3.11 Total: -7.11 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.40 Total: -115.77 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -64.43 1.42 -63.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069719705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.936 kcal (2) G-P(sol) polarization free energy of solvation -64.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds