Wall clock time and date at job start Mon Mar 30 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99960 * 2 1 4 4 C 1.50699 * 109.46871 * 293.95527 * 3 2 1 5 5 H 1.08001 * 120.00253 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00016 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99769 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00297 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47432 * 89.99770 * 8 6 4 10 10 H 1.48509 * 109.47219 * 209.99887 * 8 6 4 11 11 H 1.48497 * 109.47107 * 329.99473 * 8 6 4 12 12 C 1.46902 * 111.00327 * 123.95630 * 2 1 3 13 13 H 1.08996 * 110.64166 * 297.23315 * 12 2 1 14 14 C 1.54590 * 110.72490 * 174.08113 * 12 2 1 15 15 C 1.53996 * 105.14063 * 219.68175 * 14 12 2 16 16 N 1.47907 * 107.05649 * 358.77777 * 15 14 12 17 17 C 1.48533 * 105.81932 * 25.32657 * 16 15 14 18 18 H 1.08995 * 109.47057 * 63.09804 * 1 2 3 19 19 H 1.09000 * 109.46558 * 183.09403 * 1 2 3 20 20 H 1.08994 * 109.46754 * 303.08915 * 1 2 3 21 21 H 1.08991 * 109.46782 * 53.95314 * 3 2 1 22 22 H 1.08997 * 109.46599 * 173.95832 * 3 2 1 23 23 H 0.96993 * 119.99987 * 179.97438 * 7 6 4 24 24 H 1.08996 * 110.31212 * 338.59718 * 14 12 2 25 25 H 1.09005 * 110.31127 * 100.67186 * 14 12 2 26 26 H 1.09002 * 109.91770 * 118.12353 * 15 14 12 27 27 H 1.08995 * 109.92148 * 239.22835 * 15 14 12 28 28 H 1.00904 * 110.99575 * 264.81968 * 16 15 14 29 29 H 1.09000 * 110.66811 * 202.36123 * 17 16 15 30 30 H 1.09001 * 110.66355 * 79.23254 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0276 3.3491 -1.5290 7 7 2.7128 4.0016 -0.6154 8 14 1.5825 4.1869 -3.1381 9 1 0.2707 4.8679 -2.9954 10 1 2.6252 5.1876 -3.4801 11 1 1.4981 3.1713 -4.2181 12 6 1.9955 -0.7660 1.1375 13 1 1.6975 -0.3076 2.0804 14 6 3.5342 -0.8870 1.0503 15 6 3.8508 -2.3252 1.5010 16 7 2.5632 -2.9634 1.8510 17 6 1.5275 -2.2414 1.0687 18 1 -0.3633 0.4650 -0.9164 19 1 -0.3632 -1.0262 0.0555 20 1 -0.3632 0.5610 0.8610 21 1 1.5611 1.9273 0.8309 22 1 3.0797 1.3443 0.1082 23 1 2.9880 4.9174 -0.7777 24 1 3.8686 -0.7297 0.0249 25 1 4.0088 -0.1670 1.7171 26 1 4.3276 -2.8726 0.6879 27 1 4.5075 -2.3058 2.3706 28 1 2.3825 -2.8935 2.8413 29 1 0.5469 -2.3558 1.5309 30 1 1.5108 -2.5920 0.0368 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070895826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:16 Heat of formation + Delta-G solvation = 4.150304 kcal Electronic energy + Delta-G solvation = -11519.126439 eV Core-core repulsion = 9542.068722 eV Total energy + Delta-G solvation = -1977.057717 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.63382 -35.24752 -32.43504 -29.29036 -28.25132 -26.75758 -24.49659 -21.54467 -21.12634 -19.12590 -16.52268 -16.31652 -15.27355 -14.59462 -14.02760 -13.42866 -13.31276 -12.67165 -12.49564 -12.04625 -11.79806 -11.21983 -11.09178 -10.87200 -10.62517 -10.57454 -10.36643 -10.24144 -9.76984 -9.24940 -8.45957 -8.41053 -7.26553 -6.03353 -4.04614 3.31154 3.37284 3.41952 4.39161 4.46945 4.96309 5.12607 5.30750 5.33699 5.42753 5.75444 5.77346 5.97132 6.10538 6.16734 6.27481 6.34055 6.49614 6.61164 6.74603 6.91681 7.30927 7.32634 7.50349 7.80208 8.08908 8.19001 8.55171 9.03204 9.59563 11.07599 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.069273 B = 0.009872 C = 0.009205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.098622 B = 2835.534857 C = 3040.959512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.049 3.951 13 H 0.032 0.968 14 C -0.143 4.143 15 C 0.044 3.956 16 N -0.677 5.677 17 C 0.051 3.949 18 H 0.072 0.928 19 H 0.046 0.954 20 H 0.011 0.989 21 H -0.012 1.012 22 H 0.033 0.967 23 H 0.261 0.739 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.331 0.669 29 H 0.066 0.934 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -8.941 3.976 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.062 4.062 13 H 0.050 0.950 14 C -0.182 4.182 15 C -0.086 4.086 16 N -0.303 5.303 17 C -0.079 4.079 18 H 0.091 0.909 19 H 0.065 0.935 20 H 0.029 0.971 21 H 0.005 0.995 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.552 -9.606 3.141 10.121 hybrid contribution -0.494 2.047 0.446 2.152 sum -1.046 -7.559 3.587 8.432 Atomic orbital electron populations 1.22212 0.88904 0.98990 1.01004 1.62246 1.06764 1.17848 1.38612 1.19770 0.95674 0.81486 0.96477 1.21174 1.34740 0.96932 1.01703 0.91868 1.25001 0.95306 0.97363 0.97031 1.69963 1.38418 1.11428 1.34118 0.86493 0.77977 0.79222 0.83711 1.20762 1.21247 1.19742 1.23141 0.94887 0.94926 0.93227 0.95011 1.22776 0.95626 0.96399 1.03370 1.22704 0.92080 0.93280 1.00508 1.62828 1.02760 1.54202 1.10540 1.23168 0.94019 0.90948 0.99744 0.90881 0.93522 0.97083 0.99467 0.94883 0.92955 0.89643 0.91958 0.90748 0.92144 0.85506 0.91582 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.19 60.07 0.55 1.29 16 2 N -0.53 -11.62 4.59 -234.10 -1.07 -12.69 16 3 C 0.19 5.05 4.58 -4.97 -0.02 5.03 16 4 C -0.51 -14.40 8.56 -34.44 -0.29 -14.70 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.40 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.05 0.91 2.75 -65.86 -0.18 0.72 16 13 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 14 C -0.14 -2.47 5.32 -25.38 -0.14 -2.61 16 15 C 0.04 0.62 7.52 -2.75 -0.02 0.60 16 16 N -0.68 -9.49 7.51 -110.08 -0.83 -10.31 16 17 C 0.05 0.79 5.89 -1.90 -0.01 0.78 16 18 H 0.07 1.52 6.95 -51.93 -0.36 1.16 16 19 H 0.05 0.77 6.74 -51.93 -0.35 0.42 16 20 H 0.01 0.21 8.11 -51.93 -0.42 -0.21 16 21 H -0.01 -0.36 8.10 -51.93 -0.42 -0.78 16 22 H 0.03 0.92 6.77 -51.93 -0.35 0.57 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.08 1.65 7.81 -51.93 -0.41 1.25 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.33 4.03 8.92 -39.29 -0.35 3.68 16 29 H 0.07 0.92 7.83 -51.93 -0.41 0.52 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 242.83 15.07 3.66 3.66 Total: -1.00 -29.84 242.83 -7.42 -37.26 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.69 Total: -1.04 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.21 Total: -7.43 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -1.16 Total: -49.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.84 -7.42 -37.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070895826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.411 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds