Wall clock time and date at job start Mon Mar 30 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46899 * 2 1 4 4 C 1.36939 * 119.99722 * 95.80144 * 3 2 1 5 5 H 1.08003 * 119.99712 * 216.58443 * 4 3 2 6 6 C 1.38808 * 120.00104 * 36.58519 * 4 3 2 7 7 N 1.31626 * 119.99784 * 213.81158 * 6 4 3 8 8 Si 1.86798 * 120.00240 * 33.81381 * 6 4 3 9 9 H 1.48500 * 109.47121 * 95.27059 * 8 6 4 10 10 H 1.48499 * 109.47237 * 215.27013 * 8 6 4 11 11 H 1.48500 * 109.47030 * 335.27075 * 8 6 4 12 12 C 1.46495 * 120.00211 * 275.79971 * 3 2 1 13 13 H 1.09007 * 110.27172 * 359.36388 * 12 3 2 14 14 C 1.54600 * 110.31060 * 237.17077 * 12 3 2 15 15 C 1.54936 * 102.92111 * 219.12501 * 14 12 3 16 16 N 1.48526 * 103.22846 * 37.41538 * 15 14 12 17 17 C 1.47904 * 105.81959 * 320.79223 * 16 15 14 18 18 H 1.09000 * 109.46723 * 184.92978 * 1 2 3 19 19 H 1.08999 * 109.47069 * 304.92686 * 1 2 3 20 20 H 1.08995 * 109.47689 * 64.92599 * 1 2 3 21 21 H 1.08995 * 109.46615 * 240.00500 * 2 1 3 22 22 H 1.08993 * 109.46935 * 120.00010 * 2 1 3 23 23 H 0.96996 * 119.99554 * 179.97438 * 7 6 4 24 24 H 1.09001 * 110.72325 * 337.48491 * 14 12 3 25 25 H 1.08998 * 110.71980 * 100.76545 * 14 12 3 26 26 H 1.08997 * 110.66754 * 278.97806 * 15 14 12 27 27 H 1.09000 * 110.80771 * 155.91664 * 15 14 12 28 28 H 1.00900 * 111.00325 * 200.27769 * 16 15 14 29 29 H 1.09008 * 109.91717 * 265.97982 * 17 16 15 30 30 H 1.08993 * 110.08575 * 144.78135 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3595 1.9868 1.1799 5 1 2.1522 3.0364 1.3279 6 6 2.9719 1.2517 2.1856 7 7 2.7246 1.5302 3.4480 8 14 4.1469 -0.1327 1.7474 9 1 5.5415 0.3771 1.7663 10 1 4.0082 -1.2315 2.7367 11 1 3.8252 -0.6443 0.3910 12 6 2.1416 2.1146 -1.2622 13 1 1.8402 1.4823 -2.0974 14 6 3.5939 2.6078 -1.4566 15 6 3.4018 4.0170 -2.0714 16 7 2.2093 4.5398 -1.3569 17 6 1.2845 3.3933 -1.2233 18 1 -0.3633 -1.0239 0.0883 19 1 -0.3633 0.5884 0.8426 20 1 -0.3634 0.4355 -0.9307 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 3.1522 1.0163 4.1508 24 1 4.1109 2.6719 -0.4992 25 1 4.1333 1.9570 -2.1447 26 1 3.2088 3.9467 -3.1418 27 1 4.2716 4.6452 -1.8790 28 1 1.7796 5.2927 -1.8733 29 1 0.5750 3.3901 -2.0509 30 1 0.7490 3.4528 -0.2758 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070899843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:09 Heat of formation + Delta-G solvation = 6.492138 kcal Electronic energy + Delta-G solvation = -11954.194893 eV Core-core repulsion = 9977.238726 eV Total energy + Delta-G solvation = -1976.956167 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67100 -36.73500 -33.75941 -31.59459 -30.06096 -28.82939 -25.62690 -23.23755 -22.25100 -21.02117 -18.34824 -17.43544 -17.00938 -16.62945 -15.17448 -15.05879 -14.79482 -14.13848 -13.95483 -13.51696 -13.15408 -13.01658 -12.73087 -12.53447 -12.32896 -12.30825 -11.89652 -11.69402 -11.39444 -11.27674 -10.50594 -9.26409 -8.66071 -8.17953 -5.39658 1.35771 1.45276 1.53447 2.49888 3.02230 3.37794 3.54522 4.12083 4.16220 4.33291 4.45275 4.48792 4.65997 4.75198 4.78844 4.82817 5.00289 5.10674 5.12405 5.26266 5.38398 5.50302 5.56050 5.96371 6.08565 6.34913 6.66312 7.10954 7.77581 8.18298 9.03248 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.017494 C = 0.015375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.833201 B = 1600.173302 C = 1820.757963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 N -0.605 5.605 4 C -0.236 4.236 5 H 0.040 0.960 6 C -0.014 4.014 7 N -0.937 5.937 8 Si 0.909 3.091 9 H -0.302 1.302 10 H -0.301 1.301 11 H -0.239 1.239 12 C 0.157 3.843 13 H 0.084 0.916 14 C -0.140 4.140 15 C 0.050 3.950 16 N -0.688 5.688 17 C 0.039 3.961 18 H 0.064 0.936 19 H 0.029 0.971 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.031 0.969 23 H 0.259 0.741 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.341 0.659 29 H 0.052 0.948 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -0.595 -13.233 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 N -0.327 5.327 4 C -0.366 4.366 5 H 0.058 0.942 6 C -0.210 4.210 7 N -0.580 5.580 8 Si 0.736 3.264 9 H -0.230 1.230 10 H -0.228 1.228 11 H -0.163 1.163 12 C 0.050 3.950 13 H 0.102 0.898 14 C -0.179 4.179 15 C -0.080 4.080 16 N -0.318 5.318 17 C -0.092 4.092 18 H 0.083 0.917 19 H 0.048 0.952 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.070 0.930 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.994 -0.668 -12.405 12.463 hybrid contribution 0.383 -0.545 -0.205 0.697 sum -0.611 -1.213 -12.610 12.683 Atomic orbital electron populations 1.22165 0.97385 1.00854 1.00910 1.21247 0.93637 0.85211 0.98869 1.44361 1.74260 1.11789 1.02299 1.18355 1.32426 0.95235 0.90547 0.94237 1.25954 1.00103 1.00388 0.94586 1.70173 1.43207 1.44350 1.00297 0.86342 0.80820 0.79845 0.79402 1.23032 1.22816 1.16265 1.21488 0.93448 0.92305 0.87769 0.89773 1.22923 0.98419 0.96298 1.00292 1.22918 0.93938 0.95138 0.95961 1.62877 1.07822 1.09369 1.51732 1.22969 0.94925 0.91437 0.99835 0.91699 0.95200 0.92294 0.92398 0.95076 0.93166 0.93325 0.90598 0.92024 0.90572 0.84280 0.93005 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.23 71.98 0.74 -4.79 16 2 C 0.14 5.60 4.57 86.38 0.39 5.99 16 3 N -0.60 -27.81 2.03 -673.16 -1.37 -29.18 16 4 C -0.24 -13.33 7.97 84.03 0.67 -12.66 16 5 H 0.04 2.55 7.37 -2.91 -0.02 2.53 16 6 C -0.01 -0.80 5.00 84.86 0.42 -0.37 16 7 N -0.94 -59.40 13.97 21.65 0.30 -59.10 16 8 Si 0.91 45.49 26.29 68.60 1.80 47.29 16 9 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 10 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 11 H -0.24 -10.88 5.93 99.48 0.59 -10.29 16 12 C 0.16 5.90 3.52 45.87 0.16 6.06 16 13 H 0.08 2.69 7.92 -2.38 -0.02 2.67 16 14 C -0.14 -5.05 6.64 31.80 0.21 -4.84 16 15 C 0.05 1.47 7.55 86.65 0.65 2.12 16 16 N -0.69 -23.12 7.51 -502.22 -3.77 -26.89 16 17 C 0.04 1.41 6.86 86.44 0.59 2.01 16 18 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 19 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.06 2.08 8.06 -2.39 -0.02 2.06 16 22 H 0.03 1.43 4.59 -2.39 -0.01 1.42 16 23 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.05 2.19 7.06 -2.39 -0.02 2.17 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.34 9.18 8.92 -89.69 -0.80 8.38 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.05 2.13 7.07 -2.39 -0.02 2.12 16 Total: -1.00 -66.16 238.55 1.00 -65.16 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.19 Total: 9.19 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 3.84 Total: -6.47 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.84 Total: -115.17 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.80 Total: 47.29 kcal Total: -66.16 1.00 -65.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070899843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.647 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds