Wall clock time and date at job start Mon Mar 30 2020 02:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99561 * 2 1 4 4 H 1.08996 * 110.05336 * 28.58691 * 3 2 1 5 5 C 1.54268 * 110.03230 * 267.16497 * 3 2 1 6 6 C 1.54887 * 104.19486 * 217.10668 * 5 3 2 7 7 C 1.54888 * 102.74940 * 37.94489 * 6 5 3 8 8 C 1.53877 * 110.02928 * 150.00207 * 3 2 1 9 9 H 1.09003 * 110.03133 * 238.61775 * 8 3 2 10 10 C 1.53001 * 110.03508 * 359.97438 * 8 3 2 11 11 C 1.50694 * 109.47168 * 185.00079 * 10 8 3 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08994 * 109.47244 * 59.99990 * 1 2 3 20 20 H 1.09006 * 109.46642 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46858 * 299.99627 * 1 2 3 22 22 H 1.08998 * 110.48872 * 335.78589 * 5 3 2 23 23 H 1.09003 * 110.48272 * 98.42919 * 5 3 2 24 24 H 1.08999 * 110.75173 * 156.26205 * 6 5 3 25 25 H 1.09003 * 110.75647 * 279.62838 * 6 5 3 26 26 H 1.09000 * 110.48713 * 203.37805 * 7 6 5 27 27 H 1.09000 * 110.48442 * 80.73646 * 7 6 5 28 28 H 1.09007 * 109.46922 * 64.99781 * 10 8 3 29 29 H 1.09003 * 109.46836 * 305.00537 * 10 8 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3408 2.0126 0.4899 5 6 2.2906 1.7592 -1.4476 6 6 3.6252 2.5390 -1.3495 7 6 4.4266 1.7157 -0.3107 8 6 3.3683 1.2779 0.7228 9 1 3.3578 1.9710 1.5640 10 6 3.6710 -0.1386 1.2157 11 6 4.9414 -0.1276 2.0262 12 1 5.4790 0.7971 2.1752 13 6 5.4175 -1.2984 2.5775 14 7 4.7626 -2.4244 2.3964 15 14 6.9927 -1.2849 3.5815 16 1 7.2864 -2.6598 4.0600 17 1 8.1147 -0.8044 2.7358 18 1 6.8288 -0.3800 4.7474 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 2.4006 0.8956 -2.1034 23 1 1.4931 2.4111 -1.8042 24 1 4.1374 2.5506 -2.3115 25 1 3.4542 3.5536 -0.9895 26 1 5.1880 2.3359 0.1623 27 1 4.8816 0.8451 -0.7830 28 1 3.7915 -0.8030 0.3600 29 1 2.8471 -0.4911 1.8362 30 1 5.0978 -3.2481 2.7840 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540212.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:26 Heat of formation + Delta-G solvation = -68.899875 kcal Electronic energy + Delta-G solvation = -11596.733507 eV Core-core repulsion = 9584.215346 eV Total energy + Delta-G solvation = -2012.518162 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.58716 -35.42383 -32.85290 -30.04680 -27.66851 -25.95069 -25.26344 -22.15676 -20.24928 -18.67933 -16.60536 -15.64092 -15.11611 -14.49686 -14.28595 -13.92476 -13.27394 -12.69524 -12.06716 -11.85348 -11.36451 -10.94120 -10.92682 -10.65893 -10.55551 -10.49909 -10.25304 -10.04530 -9.53490 -9.00413 -8.90137 -8.78631 -8.18755 -5.84971 -3.86648 3.40020 3.44281 3.46589 4.42196 4.56479 5.15560 5.21263 5.48563 5.49689 5.63129 5.72003 5.79968 6.00242 6.10234 6.15549 6.20524 6.27924 6.38032 6.57338 6.66943 6.89196 7.11715 7.26298 7.87322 7.93758 8.09963 8.24295 8.60605 9.22446 9.75560 11.25917 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048162 B = 0.011913 C = 0.010007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.231510 B = 2349.732371 C = 2797.450768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.084 3.916 4 H 0.049 0.951 5 C -0.144 4.144 6 C -0.126 4.126 7 C -0.104 4.104 8 C -0.086 4.086 9 H 0.062 0.938 10 C 0.045 3.955 11 C -0.517 4.517 12 H 0.052 0.948 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.887 3.113 16 H -0.289 1.289 17 H -0.278 1.278 18 H -0.279 1.279 19 H 0.030 0.970 20 H 0.079 0.921 21 H 0.034 0.966 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 7.604 -5.721 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.027 3.973 4 H 0.067 0.933 5 C -0.182 4.182 6 C -0.164 4.164 7 C -0.142 4.142 8 C -0.105 4.105 9 H 0.080 0.920 10 C 0.008 3.992 11 C -0.556 4.556 12 H 0.070 0.930 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.715 3.285 16 H -0.214 1.214 17 H -0.204 1.204 18 H -0.204 1.204 19 H 0.048 0.952 20 H 0.098 0.902 21 H 0.053 0.947 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.416 7.239 -5.670 10.672 hybrid contribution 0.599 0.168 0.591 0.858 sum -4.818 7.406 -5.079 10.191 Atomic orbital electron populations 1.22694 0.83161 1.02026 0.98778 1.88182 1.17644 1.27474 1.94653 1.22944 0.96024 0.83769 0.94613 0.93253 1.22867 0.97325 0.99926 0.98046 1.22473 0.96017 0.98415 0.99480 1.22295 0.97287 0.99035 0.95558 1.21982 0.90380 1.02111 0.96019 0.91991 1.18878 0.95643 0.88658 0.96055 1.21318 1.08704 0.93750 1.31809 0.93018 1.25008 0.97010 0.95779 0.96653 1.69985 1.39185 0.98766 1.45409 0.86753 0.84253 0.76845 0.80666 1.21427 1.20380 1.20427 0.95180 0.90241 0.94724 0.90819 0.92803 0.92204 0.92271 0.92324 0.91123 0.96126 0.96188 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.56 16 2 O -0.36 -7.38 8.46 -35.23 -0.30 -7.68 16 3 C 0.08 1.57 3.36 -25.61 -0.09 1.49 16 4 H 0.05 0.83 7.80 -51.93 -0.41 0.42 16 5 C -0.14 -2.29 6.56 -25.07 -0.16 -2.45 16 6 C -0.13 -1.95 6.91 -24.74 -0.17 -2.12 16 7 C -0.10 -2.01 5.91 -25.07 -0.15 -2.16 16 8 C -0.09 -1.86 2.87 -89.50 -0.26 -2.12 16 9 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 10 C 0.04 1.21 3.38 -27.89 -0.09 1.12 16 11 C -0.52 -15.02 8.68 -34.44 -0.30 -15.32 16 12 H 0.05 1.45 7.72 -52.49 -0.40 1.04 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 15 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 20 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 21 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 22 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.49 7.76 -51.93 -0.40 1.09 16 28 H 0.02 0.61 7.91 -51.92 -0.41 0.19 16 29 H 0.02 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 246.91 15.07 3.72 3.72 Total: -1.00 -31.46 246.91 -6.04 -37.50 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -4.96 Total: -5.20 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.22 Total: -18.44 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.74 Total: -27.11 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.30 Total: -7.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.46 -6.04 -37.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540212.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.403 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds