Wall clock time and date at job start Mon Mar 30 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00282 * 2 1 4 4 H 1.08998 * 110.01460 * 331.38393 * 3 2 1 5 5 C 1.53874 * 110.07635 * 92.80438 * 3 2 1 6 6 C 1.54270 * 106.59709 * 119.30892 * 5 3 2 7 7 C 1.54888 * 104.19756 * 23.60720 * 6 5 3 8 8 C 1.54267 * 110.03171 * 209.99968 * 3 2 1 9 9 H 1.09007 * 110.48412 * 335.85872 * 8 3 2 10 10 C 1.52997 * 110.48986 * 98.37457 * 8 3 2 11 11 C 1.50701 * 109.47212 * 184.99880 * 10 8 3 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 H 1.09001 * 109.46600 * 60.00433 * 1 2 3 20 20 H 1.09000 * 109.47425 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 300.00429 * 1 2 3 22 22 H 1.09001 * 110.03512 * 238.59233 * 5 3 2 23 23 H 1.09000 * 110.03070 * 0.02562 * 5 3 2 24 24 H 1.08998 * 110.48535 * 142.29470 * 6 5 3 25 25 H 1.09001 * 110.48322 * 264.79940 * 6 5 3 26 26 H 1.08998 * 110.75906 * 203.74244 * 7 6 5 27 27 H 1.09004 * 110.75386 * 80.37432 * 7 6 5 28 28 H 1.09002 * 109.47153 * 64.99882 * 10 8 3 29 29 H 1.09001 * 109.46832 * 305.00073 * 10 8 3 30 30 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3407 2.0119 -0.4905 5 6 2.2897 1.7592 1.4435 6 6 3.8114 1.9912 1.5457 7 6 4.2536 2.2598 0.0858 8 6 3.3718 1.2775 -0.7247 9 1 3.7957 0.2735 -0.7018 10 6 3.2201 1.7606 -2.1684 11 6 4.5345 1.6087 -2.8898 12 1 5.3922 1.2073 -2.3705 13 6 4.6418 1.9812 -4.2130 14 7 5.7887 1.8481 -4.8425 15 14 3.1581 2.6747 -5.1112 16 1 3.1309 4.1513 -4.9557 17 1 3.2469 2.3305 -6.5530 18 1 1.9169 2.0938 -4.5391 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.7558 2.6859 1.6536 23 1 1.9824 0.9834 2.1448 24 1 4.0241 2.8561 2.1740 25 1 4.3070 1.1038 1.9394 26 1 5.3107 2.0290 -0.0464 27 1 4.0439 3.2912 -0.1979 28 1 2.9231 2.8094 -2.1714 29 1 2.4582 1.1658 -2.6723 30 1 5.8643 2.1105 -5.7733 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540214.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:29 Heat of formation + Delta-G solvation = -90.021479 kcal Electronic energy + Delta-G solvation = -11525.291748 eV Core-core repulsion = 9511.857685 eV Total energy + Delta-G solvation = -2013.434063 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.08984 -37.07411 -34.99202 -32.41917 -29.08017 -28.07939 -26.86259 -23.68093 -21.35069 -20.80932 -18.97063 -17.63034 -16.54728 -16.19742 -15.98042 -15.16375 -14.81827 -14.68334 -14.30339 -13.60560 -13.42505 -12.89857 -12.57529 -12.27913 -12.14376 -11.91926 -11.71390 -11.62000 -11.34632 -11.21559 -11.12565 -10.75264 -10.32167 -8.27971 -6.30884 1.33471 1.36251 1.48030 2.36193 2.96071 3.06756 3.72520 3.79230 4.09056 4.40899 4.51091 4.53687 4.56274 4.66932 4.78308 4.81916 4.88337 4.94201 5.05336 5.09289 5.23296 5.33909 5.39670 5.50470 5.59399 5.70132 6.31240 6.43383 6.75848 7.32691 8.88966 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.043084 B = 0.012447 C = 0.010551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.739263 B = 2249.003359 C = 2653.177756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.084 3.916 4 H 0.064 0.936 5 C -0.136 4.136 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.078 4.078 9 H 0.050 0.950 10 C -0.001 4.001 11 C -0.521 4.521 12 H 0.032 0.968 13 C 0.002 3.998 14 N -0.952 5.952 15 Si 0.949 3.051 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.252 1.252 19 H 0.038 0.962 20 H 0.096 0.904 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.009 0.991 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 1.375 11.461 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.026 3.974 4 H 0.082 0.918 5 C -0.174 4.174 6 C -0.152 4.152 7 C -0.145 4.145 8 C -0.097 4.097 9 H 0.069 0.931 10 C -0.038 4.038 11 C -0.559 4.559 12 H 0.050 0.950 13 C -0.194 4.194 14 N -0.593 5.593 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.210 1.210 18 H -0.175 1.175 19 H 0.057 0.943 20 H 0.114 0.886 21 H 0.076 0.924 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.027 0.973 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.178 1.231 11.311 15.950 hybrid contribution -0.148 0.249 -0.969 1.012 sum -11.327 1.480 10.342 15.409 Atomic orbital electron populations 1.22949 0.80120 1.03599 1.00542 1.87915 1.21100 1.28742 1.95148 1.23024 0.94262 0.83957 0.96143 0.91757 1.22612 0.97112 1.02068 0.95561 1.22308 0.95241 1.01997 0.95696 1.22344 0.98534 0.98675 0.94935 1.21905 0.94267 0.98841 0.94641 0.93100 1.19553 0.95090 0.95796 0.93353 1.21406 0.96743 1.41427 0.96332 0.94983 1.26010 0.98997 0.95886 0.98523 1.70072 1.27098 1.50410 1.11747 0.85674 0.80234 0.79464 0.77393 1.18740 1.20958 1.17531 0.94310 0.88580 0.92444 0.89621 0.90373 0.89622 0.91825 0.93258 0.91559 0.96028 0.97286 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.85 113.37 1.23 1.81 16 2 O -0.41 -13.98 10.26 -148.98 -1.53 -15.50 16 3 C 0.08 2.80 2.95 31.32 0.09 2.89 16 4 H 0.06 2.06 7.50 -2.39 -0.02 2.04 16 5 C -0.14 -3.56 6.61 31.32 0.21 -3.35 16 6 C -0.11 -3.18 6.83 31.67 0.22 -2.97 16 7 C -0.11 -3.94 5.99 31.89 0.19 -3.75 16 8 C -0.08 -3.26 2.53 -9.72 -0.02 -3.28 16 9 H 0.05 2.37 8.08 -2.38 -0.02 2.35 16 10 C 0.00 -0.03 3.39 29.85 0.10 0.07 16 11 C -0.52 -31.00 9.32 25.60 0.24 -30.76 16 12 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 13 C 0.00 0.13 5.47 84.66 0.46 0.59 16 14 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 15 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 16 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 19 H 0.04 0.93 8.10 -2.39 -0.02 0.92 16 20 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 1.90 7.96 -2.39 -0.02 1.88 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.39 7.97 -2.38 -0.02 2.37 16 28 H 0.02 1.00 7.45 -2.39 -0.02 0.99 16 29 H 0.01 0.44 7.20 -2.39 -0.02 0.43 16 30 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -67.99 245.78 4.40 -63.60 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.02 Total: 4.19 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 2.72 Total: -38.75 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.30 Total: -60.78 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.53 Total: -15.50 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -67.99 4.40 -63.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540214.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.426 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds