Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 H 1.09002 * 110.43473 * 29.29872 * 3 2 1 5 5 C 1.54268 * 110.48606 * 266.76020 * 3 2 1 6 6 C 1.53873 * 106.59703 * 217.58190 * 5 3 2 7 7 C 1.54265 * 106.59997 * 359.97438 * 6 5 3 8 8 C 1.54888 * 104.19721 * 23.61451 * 7 6 5 9 9 H 1.09000 * 110.75534 * 80.36765 * 8 7 6 10 10 C 1.52994 * 110.76041 * 203.73967 * 8 7 6 11 11 C 1.50694 * 109.47437 * 288.32998 * 10 8 7 12 12 H 1.08006 * 119.99603 * 359.97438 * 11 10 8 13 13 C 1.37881 * 120.00408 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99339 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99908 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47408 * 60.00480 * 15 13 11 17 17 H 1.48505 * 109.46647 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47743 * 300.00130 * 15 13 11 19 19 H 1.08997 * 109.47050 * 60.00051 * 1 2 3 20 20 H 1.09002 * 109.46476 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46953 * 299.99894 * 1 2 3 22 22 H 1.09002 * 110.02813 * 336.86074 * 5 3 2 23 23 H 1.08996 * 110.03417 * 98.24465 * 5 3 2 24 24 H 1.08993 * 110.03875 * 119.28743 * 6 5 3 25 25 H 1.09006 * 110.02999 * 240.66282 * 6 5 3 26 26 H 1.09007 * 110.48635 * 142.29223 * 7 6 5 27 27 H 1.08998 * 110.48903 * 264.80414 * 7 6 5 28 28 H 1.09000 * 109.46799 * 48.32731 * 10 8 7 29 29 H 1.08998 * 109.47500 * 168.32401 * 10 8 7 30 30 H 0.97002 * 119.99560 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3512 2.0155 0.4998 5 6 2.3044 1.7655 -1.4428 6 6 3.6326 2.5409 -1.3947 7 6 4.0989 2.5255 0.0757 8 6 3.4001 1.2838 0.6829 9 1 3.9412 0.3727 0.4277 10 6 3.2615 1.4270 2.1998 11 6 4.6156 1.2791 2.8442 12 1 5.4879 1.1002 2.2329 13 6 4.7411 1.3720 4.2141 14 7 3.6789 1.5892 4.9584 15 14 6.4196 1.1878 5.0128 16 1 7.3315 2.2402 4.4970 17 1 6.2851 1.3270 6.4852 18 1 6.9767 -0.1507 4.6915 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.4009 0.9000 -2.0983 23 1 1.5045 2.4152 -1.7980 24 1 4.3737 2.0518 -2.0269 25 1 3.4779 3.5674 -1.7271 26 1 5.1823 2.4188 0.1313 27 1 3.7792 3.4336 0.5868 28 1 2.8521 2.4092 2.4360 29 1 2.5926 0.6541 2.5782 30 1 3.7671 1.6542 5.9222 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -73.349898 kcal Electronic energy + Delta-G solvation = -11475.562333 eV Core-core repulsion = 9462.851204 eV Total energy + Delta-G solvation = -2012.711129 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54048 -35.60768 -32.94447 -30.13509 -27.74500 -26.12618 -25.28318 -22.16852 -19.87035 -19.18014 -16.66073 -15.86095 -15.01394 -14.52356 -14.37410 -13.98144 -13.07550 -12.89161 -12.19712 -11.88275 -11.55262 -11.22459 -10.94957 -10.80723 -10.62467 -10.46624 -10.11854 -9.91274 -9.68910 -9.34254 -9.07095 -8.70499 -8.27658 -5.93220 -3.94415 3.37430 3.41443 3.44219 4.29674 4.51702 5.14887 5.22013 5.39104 5.43747 5.60197 5.68204 5.85367 5.92947 6.02832 6.15302 6.20572 6.24309 6.35869 6.52564 6.61962 6.86863 7.05461 7.19290 7.70433 7.77386 7.95603 8.06990 8.50505 9.11679 9.68577 11.18273 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048541 B = 0.011033 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.692114 B = 2537.209902 C = 2938.647085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.082 3.918 4 H 0.062 0.938 5 C -0.146 4.146 6 C -0.123 4.123 7 C -0.108 4.108 8 C -0.076 4.076 9 H 0.071 0.929 10 C 0.031 3.969 11 C -0.513 4.513 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 H 0.032 0.968 20 H 0.078 0.922 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.014 0.986 29 H 0.019 0.981 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 0.747 -10.087 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.024 3.976 4 H 0.080 0.920 5 C -0.183 4.183 6 C -0.161 4.161 7 C -0.146 4.146 8 C -0.095 4.095 9 H 0.090 0.910 10 C -0.006 4.006 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 H 0.050 0.950 20 H 0.096 0.904 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.524 0.607 -9.907 10.533 hybrid contribution 0.610 0.152 0.505 0.806 sum -2.914 0.759 -9.402 9.873 Atomic orbital electron populations 1.22695 0.82444 1.01929 0.99402 1.87934 1.18531 1.28445 1.94812 1.23297 0.96439 0.83632 0.94206 0.91990 1.22633 0.97590 0.99854 0.98271 1.22099 0.96382 0.99130 0.98465 1.22247 1.00485 0.98776 0.93052 1.22266 0.91394 0.97428 0.98399 0.91045 1.19093 0.97135 0.96941 0.87453 1.21195 0.93829 1.48465 0.91624 0.92734 1.25014 0.96433 0.95533 0.97537 1.69957 1.28538 1.50054 1.05161 0.86687 0.84690 0.78642 0.78143 1.20312 1.21388 1.20285 0.94950 0.90351 0.94121 0.91456 0.92748 0.92323 0.92596 0.91514 0.91714 0.96740 0.96294 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.86 101.05 1.10 1.57 16 2 O -0.38 -7.26 10.42 -35.23 -0.37 -7.62 16 3 C 0.08 1.54 2.78 -25.08 -0.07 1.47 16 4 H 0.06 1.16 7.74 -51.93 -0.40 0.76 16 5 C -0.15 -2.27 6.56 -25.61 -0.17 -2.44 16 6 C -0.12 -1.89 6.80 -25.61 -0.17 -2.06 16 7 C -0.11 -2.04 5.98 -25.07 -0.15 -2.19 16 8 C -0.08 -1.65 2.54 -88.64 -0.22 -1.88 16 9 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 10 C 0.03 0.82 4.47 -27.89 -0.12 0.69 16 11 C -0.51 -14.71 8.82 -34.44 -0.30 -15.02 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.60 8.10 -51.93 -0.42 0.17 16 22 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.06 1.25 7.94 -51.93 -0.41 0.83 16 28 H 0.01 0.40 7.99 -51.93 -0.41 -0.02 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 249.86 15.07 3.77 3.77 Total: -1.00 -30.66 249.86 -6.09 -36.76 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.99 Total: -4.89 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.22 Total: -18.33 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.68 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.37 Total: -7.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.66 -6.09 -36.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.592 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds