Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 H 1.09002 * 110.43473 * 29.29872 * 3 2 1 5 5 C 1.54268 * 110.48606 * 266.76020 * 3 2 1 6 6 C 1.53873 * 106.59703 * 217.58190 * 5 3 2 7 7 C 1.54265 * 106.59997 * 359.97438 * 6 5 3 8 8 C 1.54888 * 104.19721 * 23.61451 * 7 6 5 9 9 H 1.09000 * 110.75534 * 80.36765 * 8 7 6 10 10 C 1.52994 * 110.76041 * 203.73967 * 8 7 6 11 11 C 1.50694 * 109.47437 * 288.32998 * 10 8 7 12 12 H 1.08006 * 119.99603 * 359.97438 * 11 10 8 13 13 C 1.37881 * 120.00408 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99339 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99908 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47408 * 60.00480 * 15 13 11 17 17 H 1.48505 * 109.46647 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47743 * 300.00130 * 15 13 11 19 19 H 1.08997 * 109.47050 * 60.00051 * 1 2 3 20 20 H 1.09002 * 109.46476 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46953 * 299.99894 * 1 2 3 22 22 H 1.09002 * 110.02813 * 336.86074 * 5 3 2 23 23 H 1.08996 * 110.03417 * 98.24465 * 5 3 2 24 24 H 1.08993 * 110.03875 * 119.28743 * 6 5 3 25 25 H 1.09006 * 110.02999 * 240.66282 * 6 5 3 26 26 H 1.09007 * 110.48635 * 142.29223 * 7 6 5 27 27 H 1.08998 * 110.48903 * 264.80414 * 7 6 5 28 28 H 1.09000 * 109.46799 * 48.32731 * 10 8 7 29 29 H 1.08998 * 109.47500 * 168.32401 * 10 8 7 30 30 H 0.97002 * 119.99560 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3512 2.0155 0.4998 5 6 2.3044 1.7655 -1.4428 6 6 3.6326 2.5409 -1.3947 7 6 4.0989 2.5255 0.0757 8 6 3.4001 1.2838 0.6829 9 1 3.9412 0.3727 0.4277 10 6 3.2615 1.4270 2.1998 11 6 4.6156 1.2791 2.8442 12 1 5.4879 1.1002 2.2329 13 6 4.7411 1.3720 4.2141 14 7 3.6789 1.5892 4.9584 15 14 6.4196 1.1878 5.0128 16 1 7.3315 2.2402 4.4970 17 1 6.2851 1.3270 6.4852 18 1 6.9767 -0.1507 4.6915 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.4009 0.9000 -2.0983 23 1 1.5045 2.4152 -1.7980 24 1 4.3737 2.0518 -2.0269 25 1 3.4779 3.5674 -1.7271 26 1 5.1823 2.4188 0.1313 27 1 3.7792 3.4336 0.5868 28 1 2.8521 2.4092 2.4360 29 1 2.5926 0.6541 2.5782 30 1 3.7671 1.6542 5.9222 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = -92.569456 kcal Electronic energy + Delta-G solvation = -11476.395756 eV Core-core repulsion = 9462.851204 eV Total energy + Delta-G solvation = -2013.544552 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.01091 -37.08253 -35.05923 -32.00977 -29.09970 -27.82208 -26.82964 -24.13048 -21.21402 -20.86460 -18.57600 -17.60576 -16.71181 -16.13046 -15.87659 -15.33051 -14.66490 -14.45287 -14.14137 -13.44496 -13.29514 -12.98628 -12.66757 -12.39788 -12.22578 -11.98322 -11.88523 -11.51168 -11.22098 -11.11139 -11.09421 -10.53197 -10.27243 -8.17888 -6.28210 1.39316 1.42939 1.50554 2.41713 2.96683 3.14778 3.76272 3.81705 4.09735 4.38668 4.51811 4.53460 4.59007 4.72381 4.77002 4.83698 4.85850 5.04232 5.10287 5.15440 5.34631 5.39337 5.44165 5.58144 5.73348 5.85293 6.27748 6.42862 6.87080 7.40095 8.94003 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048541 B = 0.011033 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.692114 B = 2537.209902 C = 2938.647085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.082 3.918 4 H 0.055 0.945 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.106 4.106 8 C -0.080 4.080 9 H 0.057 0.943 10 C 0.039 3.961 11 C -0.533 4.533 12 H 0.059 0.941 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.269 1.269 19 H 0.059 0.941 20 H 0.097 0.903 21 H 0.032 0.968 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.054 0.946 28 H -0.008 1.008 29 H -0.020 1.020 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 1.057 -11.605 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.024 3.976 4 H 0.073 0.927 5 C -0.173 4.173 6 C -0.151 4.151 7 C -0.144 4.144 8 C -0.099 4.099 9 H 0.075 0.925 10 C 0.002 3.998 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.788 3.212 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.194 1.194 19 H 0.077 0.923 20 H 0.115 0.885 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.010 0.990 29 H -0.001 1.001 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.857 0.918 -11.444 11.831 hybrid contribution 0.329 0.025 1.018 1.070 sum -2.527 0.942 -10.426 10.769 Atomic orbital electron populations 1.22922 0.80206 1.03572 1.00315 1.87877 1.21056 1.28681 1.95099 1.23217 0.94446 0.83674 0.96238 0.92670 1.22566 0.98554 1.00590 0.95601 1.22063 0.96460 1.00969 0.95585 1.22181 0.99911 0.96644 0.95651 1.22137 0.94194 0.98279 0.95264 0.92496 1.18925 0.95480 0.94116 0.91232 1.21598 0.94733 1.48432 0.92317 0.92236 1.25988 1.00801 0.94943 0.98243 1.70101 1.31084 1.50887 1.05543 0.85522 0.79461 0.79148 0.77059 1.18903 1.20848 1.19397 0.92277 0.88469 0.94891 0.90710 0.90079 0.90764 0.90007 0.91988 0.92684 0.99016 1.00128 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.86 113.37 1.23 1.97 16 2 O -0.41 -15.49 10.42 -148.98 -1.55 -17.04 16 3 C 0.08 3.03 2.78 31.66 0.09 3.12 16 4 H 0.06 2.08 7.74 -2.39 -0.02 2.06 16 5 C -0.14 -3.82 6.56 31.32 0.21 -3.61 16 6 C -0.11 -3.12 6.80 31.32 0.21 -2.91 16 7 C -0.11 -3.92 5.98 31.67 0.19 -3.74 16 8 C -0.08 -3.53 2.54 -9.51 -0.02 -3.55 16 9 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 10 C 0.04 2.19 4.47 29.84 0.13 2.33 16 11 C -0.53 -31.29 8.82 25.60 0.23 -31.06 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 14 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 15 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 16 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 22 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.05 2.11 7.94 -2.39 -0.02 2.09 16 28 H -0.01 -0.50 7.99 -2.39 -0.02 -0.52 16 29 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -67.15 249.86 4.56 -62.59 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.08 Total: 2.49 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 2.72 Total: -37.14 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.28 Total: -58.29 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.55 Total: -17.04 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.15 4.56 -62.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.976 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds